A lightweight Python module to read and write FASTA sequence records

Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water

Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"

MOLeculAR structure annoTator

Snakemake pipeline for searching genomic sequences for those that encode proteins containing domains of choice

Computes the percent of the residues in each protein sequence that have been identified, based on a list of identified peptides. A graphical user interface (GUI) is provided to allow the user to select the input files, set the options, and browse the coverage results.

🌱🌟 My Personal Portfolio 🌟🌱

pmUE (Protein Modelling Unreal Engine) - a repo for constructing a molecule visualizer plugin in Unreal

Interactive Protein Sequence VIsualization/Viewer - Interactive Circos

ProtFlash: A lightweight protein language model

Implementation of the HP protein folding model with commands line interface

The Ribosome package is a Go library designed for efficient transcription and translation of DNA and RNA sequences, inspired by the real processes in living cells.

An unofficial re-implementation of PiFold, a fast inverse-folding algorithm for protein sequence design, in PyTorch.

This repository contains the FPredX models for the prediction of excitation maximum, emission maximum, brightness and oligomeric state of fluorescent proteins.

A Python 3 version of the protein descriptor package propy

Web application for protein-ligand binding sites analysis and visualization

Understanding the relationship between amino acid sequence and protein function is a long-standing problem in molecular biology with far-reaching scientific implications.

A Deep Learning based protein flexibility prediction tool.