A tool for the spatial analysis of diversity

Ancestral character reconstruction and visualisation for rooted phylogenetic trees

Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time-animated visualization.

Welcome to the StrainHub Repo - Files and Data - StrainHub Online:

Scripts for file processing and analysis in phylogenetics and phylogeography

aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.

Scripts in R for Landscape Genomics Analyses v.2

Phylogeographic workflow using sliding-windows, RAxML-NG and FastTree

R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.

Phylogeography of Yersinia pestis.

Genomic Epidemiology of SARS-CoV-2 in Pakistan

Phylogeographical analyses of SARS-CoV-2 variants of concern in Norway

Zika Phylogeography

Tracking the spread of Foot-and-Mouth Disease virus in South America

Scripts in R for analyses of Isolation by Distance (IBD) - PART 2 in LANDSCAPE GENOMICS PIPELINE

Nextstrain community build 'Molecular epidemiology of Chikungunya virus'

Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'

Plague Global Phylogeny Manuscript

Supporting code for a study on the phylogeography of the common garter snake Thamnophis sirtalis