DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Official code repository for GATK versions 4 and up

Data intensive science for everyone.

C library for high-throughput sequencing data formats

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

Tools to process and analyze deep sequencing data.

A collection of awesome things regarding all omics.

Java utilities for Bioinformatics

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Customizable workflows based on snakemake and python for the analysis of NGS data

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Tools for working with genomic and high throughput sequencing data.

A collection of Galaxy-related training material

A Java API for high-throughput sequencing data (HTS) formats.

SortMeRNA: next-generation sequence filtering and alignment tool

Annotation and Ranking of Structural Variation

UGENE is free open-source cross-platform bioinformatics software

A cool place to store your Hi-C

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data