TCGAbiolinks

Natural language processing of Gene Expression Omnibus data

A Decomposition-based Canonical Correlation Analysis for High-dimensional Datasets (JASA-20 paper)

Colocalization analysis of genetic association signals

An unsupervised approach for the integrative analysis of single-cell multi-omics data

Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data

Tool for integrative gene-based association analysis using GWAS summary stats

MONTI is a tool for analyzing large multi-omics cancer cohort data in association with clinical featuers

🕸 Network-based multi-omic integration of metabolomics data.

The statistical utility for RBP functions (SURF)

Integrative analysis for epigenomic sequencing data

A Python package for metabolite enrichment analysis.

MATLAB and R Code for sparse GCA

Code for Walker, Saunders, Rai et al., (2021).

Penalized regression for multiple types of many features with missing data using expectation-maximization (EM) algorithm.

Hidden Markov Random Field Model - Inferring Gene-Disease Association by an Integrative Analysis of eQTL GWAS and Protein-Protein Interaction data

Repository for the MetaBridge Shiny app.