Perform GWAS on Phenotype Measurements Subject to Limit of Detection for Biobank-Scale Dataset

The multivariate MArginal ePIstasis Test

Mult-Loci nonlinear/Linear Model based on new algorithm For GWAS , Epistasis and GS（ISR）

Multi-trait fine-mapping for any number of uncorrelated traits (and limited number of correlated traits)

gaiaAssociation is a tool to detect the cell specific enrichment of loci in regulatory regions through the sum of non-identical binomials

MendelianRandomization is an R package for assessing causal relationships using genetic variants as instrumental variables

Code and simulations using interaction-LD score regression

Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

Higher-order genetic interaction discovery with network-based biological priors.

MGflashfm: joint fine-mapping of genetic association signals in several traits amongst multiple population groups.

MEGASOFT

A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.

A Bayesian grouped mixture of regressions model capable of estimating SNP marker effect sizes for multiple outcomes simultaneously

Scripts of Final Master Project

multiple imputation for association studies

tips and tricks in genome-wide association studies - a tutorial

R package to perform data pre-processing for more informative bacterial GWAS

A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

MultiGWAS tool for Genome-Wide Association Studies (GWAS) in plants (diploide and tetraploide)