A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
aws
bioinformatics
snakemake
scalable
ec2
ngs
slurm
budgeting
bioinformatics-pipeline
informatics
scaling
cwl
wgs
ephemeral
genomic-data-analysis
human-genome
parallel-cluster
snv-call
giab
-
Updated
Dec 1, 2024 - WDL