A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

Genomics Workflows on AWS

CUT&RUN and CUT&Tag data processing and analysis

Data Wrangling and Processing for Genomics

Analysis pipelines for genomic sequencing data

Bioinformatics analysis scripts, workflows, general code examples

genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

Micro 612 genomics workshop

Workshop on Genomics - Genomics Adventure

Platform for Oncogenomic Reporting and Interpretation (PORI)

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment

Genetic Map Comparison

Big Compute Learning Labs

Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation

the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics

DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.