Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing

Repo for "Evolution on rugged adaptive landscapes"

A tool for multiscale forward-time simulation of protein evolution.

Blender/Bullet automatic parameter tuning/learning.

SAPIENZ^div @ SSBSE 2019: Does Diversity Improve the Test Suite Generation for Mobile Applications?

The W-Model, a tunable Black-Box Discrete Optimization Benchmarking (BB-DOB) problem, implemented for the BB-DOB@GECCO Workshop.

Software library providing fitness landscape functionality in R.

Bridging Elementary Landscapes and a Geometric Theory of Evolutionary Algorithms: First Steps (PPSN 2018)

Exploring evolutionary protein fitness landscapes

Software for inferring the intrinsic fitness landscape of poliovirus capsid protein (vp1) and comparing it with that of analogous proteins in HIV

NKCS model for exploring aspects of (surrogate-assisted) coevolution.

Fitness estimates of SARS-CoV-2 variants