SeqAn's official repository.

NGLess: NGS with less work

FastQC port to Qt5: A quality control tool for high throughput sequence data.

Parse and process FASTA and FASTQ formatted files of biological sequences.

A secure encryption tool for genomic data

Ultra Fast NGS Data QC Tool

Datastores for reads, not your papa's FASTQ files.

BioC++ Input/Output library

Binary representation of fastq files

fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data

FLiCK - Format LeveragIng Compression frameworK

simple and convenient program to convert fasta sequences to fastq sequences

Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/, original code from @marta- , with some work done by @yoann-dufresne)

Hadoop Sequence Parser (HSP) library

A pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disordered

SYLENS: Sampling Yielding LEss Noticeable Samples

Set of tools to deal with sequences in FastQ format

Lossless compression of FASTQ sequences.