Keras scripts

A simple script to run CryoSparc cluster on the fly inside a SLURM HPC job

A lightweight script to monitor RELION jobs and send information over Slack DMs

Plot metrics from a Topaz training run

A Framework for Orientation Recovery with Uncertainty Measurement in Cryo-EM Image Analysis

KLT picker: Particle picking using data-driven optimal templates (Python version)

helper scripts for Electron microscopy data processing

KLT picker: Particle picking using data-driven optimal templates (MATLAB version)

Scipion plugin for ModelAngelo: an automatic atomic model building program for cryo-EM maps. With or without providing a sequence.

Pipeline and GUI for cryoEM model refinement using Rosetta and Phenix

.MRC and .EM thumbnailer for GNOME

Web Portal for deploying Scipion-in-K8S instances (https://github.com/CERIT-SC/scipion-docker)

Plot the histogram of local resolution values of a cryo-EM reconstruction

Python3 tools for simulating cryoEM particle data.

Plot the class distribution as a function of iteration from a Class2D or Class3D job from RELION

example set up for Relion on AWS ParallelCluster for CryoEM

volumetric image toolkit for simple feature detection (segment tomograms)

Plot the 2D histogram of Euler angles covered by a set of cryo-EM particles

Report the number of particles in each class from a run_data.star file produced by RELION