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contamination

Here are 3 public repositories matching this topic...

decontaminer

amarinderthind / decontaminer

DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…

Updated Oct 12, 2024
Perl

jnarayan81 / Alienomics

Automated pipeline for HGT and contaminant detection in an assembled, annotated genome

genome ngs hgt contamination filtration alien

Updated Jan 12, 2023
Perl

jnarayan81 / autoConTAMPR

autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks

sequencing mutation markers hgt frequencies contamination scf chromatogram contampr

Updated May 24, 2020
Perl

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