R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2

R package to run BEAST2

Analyses of coelacanth morphometrics, disparity, phylogeny, and rate of evolution

Handy functions for dealing with BEAST trees in R

R package that estimates the error BEAST2 makes from a given phylogeny

Data used for analyses in "Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China" (Lu et al., Cell, 2020) https://doi.org/10.1016/j.cell.2020.04.023

Investigating HIV subtype evolution through maximum-likelihood and GTR model analysis, focusing on clade formation and genetic diversity. Utilizing BEAST for HIV-1 sequence analysis to estimate evolutionary rates and MRCA, highlighting subtype diversification.

R package to test the multi-species coalescent model using trees estimated with starBEAST2 and to estimate false-positive error rates based on samples from the posterior predictive distributions