obsBrain: Observatory of Brain
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Updated
Apr 29, 2021 - R
obsBrain: Observatory of Brain
Generate a package-manager-friendly archive of ABI gene expression maps registered in SAMRI standard space.
Load and plot Allen connectivity data in MATLAB
Generate a package-manager-friendly archive of ABI connectivity maps registered in SAMRI standard space.
Image Slicing with overlap. Takes an image, asks for user input about the number of rows and columns and slices into even parts. Customizable parameters.
Building an ontology of specialised neuron types from data - well supported terms may later migrate to CL.
Ontologized versions of the ABA structureGraphs - with mappings to Uberon
Python package for easy interaction with the Allen Institute for Brain Science
🐭 Acquiring images from allen brain atlas, mouse ISH experiments in R.
manually align specimens to annotated 3D spaces
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