Repository for the on-line metaRbolomics book at https://rformassspectrometry.github.io/metaRbolomics-book/
Including some active code that is executed upon each build.
This material, unless excplicitly otherwise stated, is CC-BY 4.0 licenced.
There is a docker image that contains the build environment to render the book at https://hub.docker.com/repository/docker/sneumann/metarbolomics-book-base Output directory and output format are configurable via environment variables.
Also check:
https://stackoverflow.com/questions/44143110/visualizing-r-function-dependencies
https://cran.r-project.org/web/packages/miniCRAN/vignettes/miniCRAN-dependency-graph.html
https://cran.r-project.org/web/packages/pkgnet/vignettes/pkgnet-intro.html pkgnet can analyze any R package locally installed. (Run installed.packages() to see the full list of packages installed on your system.)
The travisScript.sh uses the Docker image and builds the book in the build directory.
Simply run
./travisScript.sh
to build the book.
Output will be saved in the build/public directory.