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Gentlest ascent dynamics on manifolds
Python UpdatedApr 28, 2023 -
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maxima-interface Public archive
Simple interface between Common Lisp and Maxima. Moved to https://git.sr.ht/~jmbr/maxima-interface
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latex2anki Public archive
Convert decks of flashcards written in LaTeX to Anki. Moved to https://git.sr.ht/~jmbr/latex2anki
Python MIT License UpdatedMar 4, 2023 -
colvars-gaussian-processes Public archive
Use Gaussian processes as collective variables in molecular simulations with NAMD. Moved to https://git.sr.ht/~jmbr/colvars-gaussian-processes
Tcl UpdatedFeb 8, 2023 -
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make-project Public archive
Boilerplate generator for Common Lisp projects
Common Lisp UpdatedSep 5, 2022 -
diffusion-maps Public archive
Fast computation of diffusion maps and geometric harmonics in Python. Moved to https://git.sr.ht/~jmbr/diffusion-maps
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inferior-maple-mode Public archive
Simple Maple command-line interface for Emacs
Emacs Lisp UpdatedJul 20, 2021 -
cl-buchberger Public archive
Buchberger's algorithm in Common Lisp. Moved to https://git.sr.ht/~jmbr/cl-buchberger
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laplace-beltrami-eigensolver Public archive
Calculates the eigendecomposition of the Laplace-Beltrami operator on charts of Riemannian manifolds. Moved to https://git.sr.ht/~jmbr/laplace-beltrami-eigensolver
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cl-mpi Public archive
Forked from marcoheisig/cl-mpiFork of cl-mpi by M. Heisig. This fork provides bindings for the full MPI specification. Moved to https://git.sr.ht/~jmbr/cl-mpi
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sbcl-notes Public archive
Notes written while working my way through the sources of SBCL.
1 UpdatedDec 13, 2019 -
regex-trace Public archive
Trace macro with regular expression support
Common Lisp UpdatedSep 18, 2019 -
incf-cl Public archive
A collection of convenience functions and macros for Common Lisp. Moved to https://git.sr.ht/~jmbr/incf-cl
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lambda-dynamics-quadrature Public archive
Model system for validating lambda dynamics implementations. Moved to https://git.sr.ht/~jmbr/lambda-dynamics-quadrature
C++ UpdatedMay 17, 2019 -
eigensolver Public archive
Library for computing eigenvectors of large sparse matrices using ARPACK and SuiteSparse
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libeve Public archive
Genetic algorithm library written in C. Moved to https://git.sr.ht/~jmbr/libeve
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libpme6 Public archive
C++ implementation of the smooth Particle-Mesh Ewald algorithm for dispersive forces. Moved to https://git.sr.ht/~jmbr/libpme6
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halberd Public archive
Load balancer detection tool. Moved to https://git.sr.ht/~jmbr/halberd
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committor Public archive
Solver for the committor equation using the finite element method. Uses FEniCS and a potential of mean force obtained by colvars.
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school-on-molecular-kinetics Public archive
Jupyter notebooks prepared for the CECAM School on Molecular Kinetics in Lausanne, Switzerland (August 2016)
Jupyter Notebook UpdatedAug 26, 2016 -
dfftpack Public archive
A repackaging of DFFTPACK providing C/C++ header files and ready to be built using CMake.
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lbfgs Public archive
L-BFGS Software for Large-scale Unconstrained Optimization by Jorge Nocedal
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baoab-constraints Public archive
Code for numerical experiments using Langevin Dynamics with constraints
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go-replicants Public archive
Molecular simulator for proteins that uses Go-type potentials
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gnostic Public archive
Rule-based task execution system. Moved to https://git.sr.ht/~jmbr/gnostic
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callgraph Public archive
Tool for printing call graphs
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