A functional programming toolkit for R

Database diagrams editor that allows you to visualize and design your DB with a single query.

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

geNomad: Identification of mobile genetic elements

Read coverage calculator for metagenomics

HyPhy: Hypothesis testing using Phylogenies

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

The tidyverse style guide for R code

Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

Logan Unitigs and Contigs

Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

Quickly search, compare, and analyze genomic and metagenomic data sets.

This is the development home of the Snakemake wrapper repository, see

Advice on R Package Building

Aggregate results from bioinformatics analyses across many samples into a single report.

Github action to maximize the available disk space on Github runners

Hive Helsinki Coding School Projects in C

Hacks to get the DRAM sqlite DB to build

simple tools for data cleaning in R

RStudio add-in to make plots interactively with ggplot2

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Pythonic AI generation of images and videos

Write reusable, composable and modular R code

Insert and import citations, bibliographies, notes, and PDF annotations from Zotero into Obsidian.

"Graphic Design with ggplot2", a 2-day rstudio::conf(2022) Workshop by Cédric Scherer

Solve puzzles. Learn CUDA.

DALL·E Mini - Generate images from a text prompt

A package about nothing

The uncompromising Snakemake code formatter