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1. umls-to-graph umls-to-graph Public

   Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.

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2. ebc ebc Public

   A python implementation of the Ensemble Biclustering for Classification (EBC) algorithm. EBC is a co-clustering algorithm that allows you to perform co-clustering on very large, sparse, N-dimension…

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3. gnbr-scripts gnbr-scripts Public

   The actual collection of Python and Bash scripts I use to regenerate GNBR on the Stanford Sherlock cluster.

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4. pubtator-nlp pubtator-nlp Public

   Tools for term counting, term co-occurrence counting, dependency parsing, and other manipulations of the PubTator database.

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