analysis of phylogenetics and evolution

Primer design from single genes to whole gene families for unlocking the tree of life

Rust interface for Linux taskstats

Plotting scripts for long read sequencing data

Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.

A general metagenomics data mining system focus on robust microbiome research

A package for calculating kinship matrix

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

React rerelease of MSAViewer

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

A system handler to get information and interact with processes written in Rust

Cross-platform async library for system information fetching 🦀

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

A list of interesting genome browser or genome-browser-like implementations

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objective function.

View biological networks via Cytoscape.js and sbgn-ml

A python extension for quick access to bigWig and bigBed files

📊 A React component to interactively view multiple sequence alignments (MSA).