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1. fitDNM fitDNM Public

   Code for running fitDNM genome-wide by using Snakemake

   Python 4

2. HAT HAT Public

   HAT is a set of tools for calling de novo variants from whole-genome sequencing data.

   Python 23

3. ACES ACES Public

   ACES is a workflow to query small sequences in a large set of genomes. It provides several outputs including BLAST results, a multiple sequence alignment file, a graphical fragment assembly file, a…

   Python 5

4. acorn acorn Public

   acorn is an R package that examines various features of de novo variants including subsetting DNVs by individual, variant type, or genomic region; calculating features including variant change coun…

   R 6

5. Hare Hare Public

   A de novo variant caller leveraging Parabricks GPU accelerated variant calling

   Python 6

6. 3D-CLUMP 3D-CLUMP Public

   Software to test for clustering of missense variants in 3D protein structures.

   Python 1