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@Gardner-BinfLab

University of Otago, Gardner BinfLab

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  1. TISIGNER-ReactJS TISIGNER-ReactJS Public

    TISIGNER: Unleash the power of synthetic biology

    JavaScript 18 7

  2. deltaBS deltaBS Public

    Quantifying the significance of genetic variation using probabilistic profile-based methods.

    TeX 17 1

  3. SoDoPE_paper_2020 SoDoPE_paper_2020 Public

    Jupyter Notebook 9 5

  4. RNA_Interactions_Benchmark RNA_Interactions_Benchmark Public

    RNA-RNA interaction predictions tools benchmark scripts, wrappers and datafiles.

    Python 7 1

  5. invasive_salmonella invasive_salmonella Public

    Data and code to accompany our paper on identifying patterns of gene degradation associated with invasiveness in Salmonella

    Perl 7 1

  6. Razor Razor Public

    Tool to predict eukaryotic signal peptides. In addition, prediction of toxin and fungi signal peptides is also done.

    Python 4 1

Repositories

Showing 10 of 32 repositories
  • TIsigner_paper_2019 Public

    Code related to TIsigner manuscript and webserver

    Gardner-BinfLab/TIsigner_paper_2019’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 16, 2024
  • Avoidance-v2 Public
    Gardner-BinfLab/Avoidance-v2’s past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Jun 17, 2024
  • Enterobacteriaceae-TraDIS Public
    Gardner-BinfLab/Enterobacteriaceae-TraDIS’s past year of commit activity
    Gnuplot 0 0 0 0 Updated Jun 11, 2024
  • PCPBFull Public

    A software pipeline to reproduce results in the paper 'Flawed machine-learning confounds coding sequence annotation' by the Gardner Lab

    Gardner-BinfLab/PCPBFull’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jun 9, 2024
  • PCPBSlim Public

    Data and results for the paper "Flawed machine-learning confounds coding sequence annotation"

    Gardner-BinfLab/PCPBSlim’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jun 9, 2024
  • invasive_salmonella Public

    Data and code to accompany our paper on identifying patterns of gene degradation associated with invasiveness in Salmonella

    Gardner-BinfLab/invasive_salmonella’s past year of commit activity
    Perl 7 GPL-3.0 1 0 0 Updated Apr 26, 2023
  • TISIGNER-ReactJS Public

    TISIGNER: Unleash the power of synthetic biology

    Gardner-BinfLab/TISIGNER-ReactJS’s past year of commit activity
    JavaScript 18 7 0 12 Updated Mar 3, 2023
  • PPI_Analysis_2022 Public

    An accurate, scalable and generalisable tool for predicting protein-protein interactions

    Gardner-BinfLab/PPI_Analysis_2022’s past year of commit activity
    Python 1 0 1 0 Updated Nov 4, 2022
  • Razor_paper_2021 Public
    Gardner-BinfLab/Razor_paper_2021’s past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Oct 27, 2022
  • TIsigner Public

    Translation Initiation coding region designer

    Gardner-BinfLab/TIsigner’s past year of commit activity
    CSS 2 3 0 3 Updated Jun 21, 2022
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