A collection of unexpected challenges and learnings with nextflow and nf-core. The provided examples reflect my journey in learning nextflow and generally assume an intermediate familiarity with nextflow.
The contents of this repository are best enjoyed from the rendered site. The site is generated using mkdocs-material and organized as follows:
At any point, you can also explore the documentation and examples interactively. Either by opening the project in a Gitpod which comes pre-installed with the dependencies to serve the documentation, as well as nextflow to run the examples. Or by cloning the repository and exploring it with your favorite editor and run nextflow locally.
Contributions are most welcome and I very much aim for this to be a community-driven project. In fact, most of the solutions provided here came from discussions on the nextflow or nf-core Slack. Both are incredible communities and I can only recommend that you join. Please open an issue on the repository if you have a good example, an idea, or any other suggestion.
Thanks go to these wonderful people (emoji key):
FriederikeHanssen 📖 💡 |
James A. Fellows Yates 📖 💡 |
Simon Pearce 📖 💡 |
This project follows the all-contributors specification. Contributions of any kind welcome!
As mentioned, nextflow has an amazing community. I want to mention a few people here who have been especially helpful in my interactions. In alphabetical order:
- Friederike Hanssen
- Harshil Patel
- Jose Espinosa-Carrasco
- Mahesh Binzer-Panchal
- Maxime U. Garcia
- Phil Ewels
- Pontus Freyhult
- Robert Syme
If you feel that I forgot you in this list. Please let me know, it's not intentional!
All examples and descriptions are licensed under the Creative Commons Attribution-ShareAlike 4.0 International License.