BioJS
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| Repository | |
|---|---|
| Written in | JavaScript |
| Operating system | Any |
| Platform | Cross-platform |
| Type | Bioinformatics |
| License | Apache 2 |
| Website | biojs |
BioJS [1] is an open source project for bioinformatics data on the web. Its mission is to develop an open-source library of JavaScript components to visualise biological data [2].
Selected list of published components
- DAG Viewer [3]
- DNA Content Viewer [4]
- FeatureViewer [5]
- HeatMapViewer [6]
- Intermine analysis [3]
- Intermine endpoints [3]
- KEGGViewer [7]
- PPI-Interactions [8]
- PsicquicGraph [7]
- Sequence [9]
- wigExplorer [10]
- treeWidget [11]
Institutions using BioJS
See also
References
- ^ Corpas, Manuel; Jimenez, Rafael; Carbon, Seth J; García, Alex; Garcia, Leyla; Goldberg, Tatyana; Gomez, John; Kalderimis, Alexis; Lewis, Suzanna E; Mulvany, Ian; Pawlik, Aleksandra; Rowland, Francis; Salazar, Gustavo; Schreiber, Fabian; Sillitoe, Ian; Spooner, William H; Thanki, Anil; Villaveces, José M; Yachdav, Guy; Hermjakob, Henning (2014). "BioJS: an open source standard for biological visualisation – its status in 2014". F1000Research. doi:10.12688/f1000research.3-55.v1. ISSN 2046-1402.
{{cite journal}}: CS1 maint: unflagged free DOI (link) - ^ "BioJS Vision and Mission". BioJS. Retrieved 29 August 2014.
- ^ a b c Kalderimis, Alexis; Stepan, Radek; Sullivan, Julie; Lyne, Rachel; Lyne, Michael; Micklem, Gos (2014). "BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs". F1000Research. doi:10.12688/f1000research.3-51.v1. ISSN 2046-1402.
{{cite journal}}: CS1 maint: unflagged free DOI (link) Cite error: The named reference "KalderimisStepan2014" was defined multiple times with different content (see the help page). - ^ Thanki, Anil S.; Caim, Shabhonam; Corpas, Manuel; Davey, Robert P. (2014). "DNAContentViewer a BioJS component to visualise GC/AT Content". F1000Research. doi:10.12688/f1000research.3-54.v1. ISSN 2046-1402.
{{cite journal}}: CS1 maint: unflagged free DOI (link) - ^ Garcia, Leyla; Yachdav, Guy; Martin, Maria-Jesus (2014). "FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences". F1000Research. doi:10.12688/f1000research.3-47.v2. ISSN 2046-1402.
{{cite journal}}: CS1 maint: unflagged free DOI (link) - ^ Yachdav, Guy; Hecht, Maximilian; Pasmanik-Chor, Metsada; Yeheskel, Adva; Rost, Burkhard (2014). "HeatMapViewer: interactive display of 2D data in biology". F1000Research. doi:10.12688/f1000research.3-48.v1. ISSN 2046-1402.
{{cite journal}}: CS1 maint: unflagged free DOI (link) - ^ a b Villaveces, Jose M.; Jimenez, Rafael C.; Habermann, Bianca H. (2014). "KEGGViewer, a BioJS component to visualize KEGG Pathways". F1000Research. doi:10.12688/f1000research.3-43.v1. ISSN 2046-1402.
{{cite journal}}: CS1 maint: unflagged free DOI (link) Cite error: The named reference "VillavecesJimenez2014" was defined multiple times with different content (see the help page). - ^ Salazar, Gustavo A.; Meintjes, Ayton; Mulder, Nicola (2014). "PPI layouts: BioJS components for the display of Protein-Protein Interactions". F1000Research. doi:10.12688/f1000research.3-50.v1. ISSN 2046-1402.
{{cite journal}}: CS1 maint: unflagged free DOI (link) - ^ Gomez, John; Jimenez, Rafael (2014). "Sequence, a BioJS component for visualising sequences". F1000Research. doi:10.12688/f1000research.3-52.v1. ISSN 2046-1402.
{{cite journal}}: CS1 maint: unflagged free DOI (link) - ^ Thanki, Anil S.; Jimenez, Rafael C.; Kaithakottil, Gemy G.; Corpas, Manuel; Davey, Robert P. (2014). "wigExplorer, a BioJS component to visualise wig data". F1000Research. doi:10.12688/f1000research.3-53.v2. ISSN 2046-1402.
{{cite journal}}: CS1 maint: unflagged free DOI (link) - ^ Schreiber, Fabian (2014). "treeWidget: a BioJS component to visualise phylogenetic trees". F1000Research. doi:10.12688/f1000research.3-49.v1. ISSN 2046-1402.
{{cite journal}}: CS1 maint: unflagged free DOI (link)