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Kathleen Marchal
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2020 – today
- 2022
- [j42]Dries Van Daele
, Bram Weytjens, Luc De Raedt
OMEN: network-based driver gene identification using mutual exclusivity. Bioinform. 38(12): 3245-3251 (2022) - 2020
- [j41]Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nat. 578(7793): 102-111 (2020)
2010 – 2019
- 2019
- [j40]Camilo Andres Perez-Romero
IAMBEE: a web-service for the identification of adaptive pathways from parallel evolved clonal populations. Nucleic Acids Res. 47(Webserver-Issue): W151-W157 (2019) - 2018
- [j39]Mushthofa Mushthofa
Modeling multi-valued biological interaction networks using fuzzy answer set programming. Fuzzy Sets Syst. 345: 63-82 (2018) - 2016
- [j38]Thanh Le Van, Matthijs van Leeuwen, Ana Carolina Fierro, Dries De Maeyer, Jimmy Van den Eynden
Simultaneous discovery of cancer subtypes and subtype features by molecular data integration. Bioinform. 32(17): 445-454 (2016) - [j37]Sergio Pulido-Tamayo, Jorge Duitama
EXPLoRA-web: linkage analysis of quantitative trait loci using bulk segregant analysis. Nucleic Acids Res. 44(Webserver-Issue): W142-W146 (2016) - 2015
- [j36]Jimmy Van den Eynden
SomInaClust: detection of cancer genes based on somatic mutation patterns of inactivation and clustering. BMC Bioinform. 16: 125:1-125:12 (2015) - [j35]Dries De Maeyer, Bram Weytjens, Joris Renkens, Luc De Raedt
PheNetic: network-based interpretation of molecular profiling data. Nucleic Acids Res. 43(Webserver-Issue): W244-W250 (2015) - 2014
- [j34]Qiang Fu, Ana Carolina Fierro, Pieter Meysman
MAGIC: access portal to a cross-platform gene expression compendium for maize. Bioinform. 30(9): 1316-1318 (2014) - [j33]Mushthofa Mushthofa
ASP-G: an ASP-based method for finding attractors in genetic regulatory networks. Bioinform. 30(21): 3086-3092 (2014) - [j32]Pieter Meysman
COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia. Nucleic Acids Res. 42(Database-Issue): 649-653 (2014) - [c11]Thanh Le Van, Matthijs van Leeuwen, Siegfried Nijssen, Ana Carolina Fierro, Kathleen Marchal, Luc De Raedt
Ranked Tiling. ECML/PKDD (2) 2014: 98-113 - 2013
- [j31]Lieven P. C. Verbeke, Lore Cloots, Piet Demeester, Jan Fostier, Kathleen Marchal
EPSILON: an eQTL prioritization framework using similarity measures derived from local networks. Bioinform. 29(10): 1308-1316 (2013) - [j30]Pushpike Jayantha Thilakarathne, Geert Verbeke
Identifying differentially expressed genes in the absence of replication. Int. J. Bioinform. Res. Appl. 9(1): 71-90 (2013) - [j29]Lyn Venken, Kathleen Marchal
Synthetic Biology and Microdevices: A Powerful Combination. ACM J. Emerg. Technol. Comput. Syst. 9(4): 30:1-30:22 (2013) - [c10]Yao Yao, Kathleen Marchal, Yves Van de Peer:
Using novel bio-inspired principles to improve adaptability of evolutionary robots in dynamically changing environments. ECAL 2013: 1234 - [c9]Guillermín Agüero-Chapín, Aminael Sánchez-Rodríguez, Pedro I. Hidalgo-Yanes, Yunierkis Pérez-Castillo, Reinaldo Molina Ruiz, Kathleen Marchal, Vítor V. Vasconcelos, Agostinho Antunes:
An alignment-free approach for eukaryotic ITS2 annotation and phylogenetic inference. IWBBIO 2013: 155-156 - 2012
- [j28]Marleen Claeys, Valerie Storms, Hong Sun, Tom Michoel
MotifSuite: workflow for probabilistic motif detection and assessment. Bioinform. 28(14): 1931-1932 (2012) - [c8]Thanh Le Van, Ana Carolina Fierro, Tias Guns
Mining Local Staircase Patterns in Noisy Data. ICDM Workshops 2012: 139-146 - 2011
- [j27]Riet De Smet, Kathleen Marchal
An ensemble biclustering approach for querying gene expression compendia with experimental lists. Bioinform. 27(14): 1948-1956 (2011) - [j26]Hui Zhao
Query-based biclustering of gene expression data using Probabilistic Relational Models. BMC Bioinform. 12(S-1): S37 (2011) - [j25]Ines Thiele
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. BMC Syst. Biol. 5: 8 (2011) - [j24]Pieter Meysman
Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli. Nucleic Acids Res. 39(2): 6 (2011) - 2010
- [c7]Riet De Smet, Kathleen Marchal
An ensemble method for querying gene expression compendia with experimental lists. BIBM 2010: 314-318 - [c6]Tias Guns
Cis-regulatory module detection using constraint programming. BIBM 2010: 363-368
2000 – 2009
- 2009
- [j23]Anagha Joshi, Riet De Smet, Kathleen Marchal
Module networks revisited: computational assessment and prioritization of model predictions. Bioinform. 25(4): 490-496 (2009) - [j22]Hong Sun, Karen Lemmens, Tim Van den Bulcke, Kristof Engelen
ViTraM: visualization of transcriptional modules. Bioinform. 25(18): 2450-2451 (2009) - [j21]Hong Sun, Tijl De Bie, Valerie Storms, Qiang Fu, Thomas Dhollander, Karen Lemmens, Annemieke Verstuyf
ModuleDigger: an itemset mining framework for the detection of cis-regulatory modules. BMC Bioinform. 10(S-1) (2009) - [j20]Tom Michoel
Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks. BMC Syst. Biol. 3: 49 (2009) - [c5]Pushpike Jayantha Thilakarathne, Geert Verbeke, Kristof Engelen, Kathleen Marchal:
The Use of Mixed Models to Identify Differentially Expressed Genes when a Single Replicate per Biological Condition is Present. BIOCOMP 2009: 186-190 - [c4]Hong Sun, Tim Van den Bulcke
Layout and Post-Processing of Transcriptional Modules. IJCBS 2009: 116-121 - 2008
- [j19]Koenraad Van Leemput, Tim Van den Bulcke, Thomas Dhollander, Bart De Moor, Kathleen Marchal
Exploring the Operational Characteristics of Inference Algorithms for Transcriptional Networks by Means of Synthetic Data. Artif. Life 14(1): 49-63 (2008) - [j18]Ana Carolina Fierro, Raphael Thuret
Evaluation of time profile reconstruction from complex two-color microarray designs. BMC Bioinform. 9 (2008) - 2007
- [j17]Hui Zhao
CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data. Bioinform. 23(13): 1700-1701 (2007) - [j16]Thomas Dhollander, Qizheng Sheng, Karen Lemmens, Bart De Moor, Kathleen Marchal
Query-driven module discovery in microarray data. Bioinform. 23(19): 2573-2580 (2007) - [j15]Katrijn Van Deun, Kathleen Marchal
Joint mapping of genes and conditions via multidimensional unfolding analysis. BMC Bioinform. 8 (2007) - [j14]Tom Michoel
Validating module network learning algorithms using simulated data. BMC Bioinform. 8(S-2) (2007) - 2006
- [j13]Kristof Engelen
A calibration method for estimating absolute expression levels from microarray data. Bioinform. 22(10): 1251-1258 (2006) - [j12]Tim Van den Bulcke, Koen Van Leemput, Bart Naudts, Piet van Remortel, Hongwu Ma, Alain Verschoren, Bart De Moor, Kathleen Marchal
SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms. BMC Bioinform. 7: 43 (2006) - [j11]Pieter Monsieurs
More robust detection of motifs in coexpressed genes by using phylogenetic information. BMC Bioinform. 7: 160 (2006) - 2005
- [j10]Nathalie Pochet
M@CBETH: a microarray classification benchmarking tool. Bioinform. 21(14): 3185-3186 (2005) - [c3]Nathalie Pochet
M@CBETH: Optimizing Clinical Microarray Classification. CSB Workshops 2005: 89-90 - [c2]Tijl De Bie, Patrick Monsieurs, Kristof Engelen, Bart De Moor, Nello Cristianini, Kathleen Marchal:
Discovering Transcriptional Modules from Motif, Chip-Chip and Microarray Data. Pacific Symposium on Biocomputing 2005 - [p1]Qizheng Sheng, Yves Moreau
Advances in Cluster Analysis of Microarray Data. Data Analysis and Visualization in Genomics and Proteomics 2005: 153-173 - 2003
- [j9]Kristof Engelen
MARAN: Normalizing Micro-array Data. Bioinform. 19(7): 893-894 (2003) - [j8]Bart De Moor, Kathleen Marchal
Bioinformatics: Organisms from Venus, Technology from Jupiter, Algorithms from Mars. Eur. J. Control 9(2-3): 237-278 (2003) - [j7]Bert Coessens, Gert Thijs, Stein Aerts
INCLUSive: a web portal and service registry for microarray and regulatory sequence analysis. Nucleic Acids Res. 31(13): 3468-3470 (2003) - 2002
- [j6]Gert Thijs, Yves Moreau
INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling. Bioinform. 18(2): 331-332 (2002) - [j5]Frank De Smet
Adaptive quality-based clustering of gene expression profiles. Bioinform. 18(5): 735-746 (2002) - [j4]Gert Thijs
A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes. J. Comput. Biol. 9(2): 447-464 (2002) - [j3]Magali Lescot
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res. 30(1): 325-327 (2002) - [j2]Yves Moreau
Functional bioinformatics of microarray data: from expression to regulation. Proc. IEEE 90(11): 1722-1743 (2002) - 2001
- [j1]Gert Thijs, Magali Lescot, Kathleen Marchal
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. Bioinform. 17(12): 1113-1122 (2001) - [c1]Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau:
A Gibbs sampling method to detect over-represented motifs in the upstream regions of co-expressed genes. RECOMB 2001: 305-312
Coauthor Index
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last updated on 2024-10-07 22:06 CEST by the dblp team
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