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Jing Zhang 0062

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affiliation: Department of Computer Science, University of California, Irvine, CA, USA
affiliation (former): Yale University, Department of Molecular Biophysics and Biochemistry, New Haven, CT, USA

Other persons with the same name

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Jing Zhang — disambiguation page
Jing Zhang 0001 — Renmin University, Department of Computer Science, Beijing, China (and 1 more)
Jing Zhang 0002 — Mount Sinai School of Medicine, New York, USA
Jing Zhang 0003 — Motorola Labs (and 1 more)
Jing Zhang 0005 — University of California, Irvine, CA, USA
Jing Zhang 0006 — Clark University, MA, USA
Jing Zhang 0007 — Shanghai Jiao-Tong University, China
Jing Zhang 0008 — Panasonic R&D (and 1 more)
Jing Zhang 0009 — Xi'an University of Technology, School of Computer Science and Engineering, China
Jing Zhang 0010 (aka: Jing Maria Zhang) — Georgia State University, Department of Mathematics and Statistics, Atlanta, GA, USA (and 1 more)

Jing Zhang 0011 — Mobile Technologies, Pittsburgh, PA, USA
Jing Zhang 0012 — Tsinghua University, Institute for Theoretical Computer Science, China
Jing Zhang 0013 — North Carolina Agricultural and Technical State University, Greensboro, NC, USA (and 3 more)
Jing Zhang 0014 — Hunan Institute of Science and Technology, College of Physics and Electronics, Yueyang, China (and 1 more)
Jing Zhang 0015 — Southeast University, Nanjing, China (and 3 more)
Jing Zhang 0017 — Beihang University, Beijing, China (and 1 more)
Jing Zhang 0018 — Beijing Union University, Basic Courses Department, China
Jing Zhang 0019 — Beihang University, Beijing Advanced Innovation Center for Biomedical Engineering, China (and 3 more)
Jing Zhang 0020 — Xi'an Jiaotong University, Frontier Institute of Science and Techonology, China (and 1 more)
Jing Zhang 0021 — Chinese Academy of Sciences, Institute of Remote Sensing and Digital Earth, Beijing, China
Jing Zhang 0022 — Guizhou University, School of Electrical Engineering, Guiyang, China (and 1 more)
Jing Zhang 0023 — Beijing University of Technology, Faculty of Information Technology, Signal and Information Processing Laboratory, China (and 1 more)
Jing Zhang 0024 — Anhui University, School of Computer Science and Technology, Hefei, China
Jing Zhang 0025 — Huazhong University of Science and Technology, School of Electronic Information and Communications, Wuhan, China (and 1 more)
Jing Zhang 0026 — Wuhan University, School of Mathematics and Statistics, China
Jing Zhang 0027 — University of Michigan, Department of Electrical Engineering and Computer Science, Ann Arbor, MI, USA
Jing Zhang 0028 — Dalian University of Technology, School of Computer Science and Technology, China
Jing Zhang 0029 — Gyeongsang National University, Department of Computer Science, Korea (and 1 more)
Jing Zhang 0030 — Boston University, Division of Systems Engineering, MA, USA
Jing Zhang 0031 — Southeast University, National Mobile Communications Research Laboratory, Nanjing, China
Jing Zhang 0032 — Changchun University of Science and Technology, College of Computer Science and Technology, China (and 1 more)
Jing Zhang 0033 — Beijing Normal University, State Key Laboratory of Cognitive Neuroscience and Learning / IDG/McGovern Institute for Brain Research, China
Jing Zhang 0034 — Harbin Engineering University, Computer Science and Technology, China (and 1 more)
Jing Zhang 0035 — Qingdao University of Science and Technology, School of Mathematics and Physics, China (and 1 more)
Jing Zhang 0036 — Tsinghua University, Department of Computer Science and Technology, Beijing, China
Jing Zhang 0037 — University of Sydney, School of Computer Science, Faculty of Engineering, UBTECH Sydney Artificial Intelligence Centre, NSW, Australia (and 4 more)
Jing Zhang 0038 — Tianjin University, School of Electrical and Information Engineering, China
Jing Zhang 0039 — Virginia Tech, Department of Computer Science, Blacksburg, VA, USA
Jing Zhang 0040 — Fujian University of Technology, College of Information Science and Engineering, Fujian Provincial Key Laboratory of Big Data Mining and Applications, Fuzhou, China
Jing Zhang 0041 — East China University of Science and Technology, Department of Computer Science and Engineering, Shanghai, China (and 1 more)
Jing Zhang 0042 — Tsinghua University, Department of Automation, Beijing, China
Jing Zhang 0043 — University of Electronic Science and Technology of China, School of Optoelectronic Information, MOEMIL Laboratory, Chengdu, China
Jing Zhang 0044 — University of California, San Diego, Department of Biomedical Informatics, CA, USA
Jing Zhang 0045 — Southwest Jiaotong University, School of Electrical Engineering, Chengdu, China
Jing Zhang 0046 — University of Electronic Science and Technology of China, School of Communication and Information Engineering, MOE Key Laboratory of Optical Fiber Sensing and Communications, Chengdu, China
Jing Zhang 0047 — Wuhan University, LIEMARS, China
Jing Zhang 0048 — Petrochina, Research Institute of Petroleum Exploration and Development, Sichuan Basin Research Center, Beijing, China
Jing Zhang 0049 — Northwestern Polytechnical University, School of Computer Science, Xi'an, China
Jing Zhang 0050 — Lamar University, Department of Computer Science, Beaumont, TX, USA
Jing Zhang 0051 — Sichuan University, College of Electrical Engineering and Information Technology, China
Jing Zhang 0052 — Australian National University, Research School of Engineering, Canberra, Australia (and 1 more)
Jing Zhang 0053 — Duke University, Department of Radiology, Durham, NC, USA (and 1 more)
Jing Zhang 0054 — Xidian University, School of Telecommunications Engineering, State Key Laboratory of Integrated Services Networks, Xi'an, China (and 1 more)
Jing Zhang 0055 — University of Macau, Department of Portuguese, Taipa, Macau
Jing Zhang 0056 — University of Science and Technology Beijing, School of Computer and Communication Engineering, China
Jing Zhang 0057 — Xi'an University of Science and Technology, China (and 1 more)
Jing Zhang 0058 — Beijing Jiaotong University, Beijing Key Lab of Traffic Data Analysis and Mining, China
Jing Zhang 0059 — Shanghai Business School, Faculty of Business Information, China
Jing Zhang 0060 — Wuhan University, LISMARS, China
Jing Zhang 0061 — Zhengzhou University of Light Industry, School of Computer and Communication Engineering, China
Jing Zhang 0063 — Capital Normal University, College of Resources Environment and Tourism, Beijing, China (and 1 more)
Jing Zhang 0064 — National University of Defense Technology, College of Liberal Arts and Sciences, Changsha, China
Jing Zhang 0065 — Nanjing University of Information Science and Technology, School of Computer and Software, China
Jing Zhang 0066 — Beijing Jiaotong University, Institute of Lightwave Technology, China
Jing Zhang 0067 — Beihang University, Department of Automation Science and Electrical Engineering, Beijing, China
Jing Zhang 0068 — Harbin Institute of Technology, School of Electrical Engineering and Automation, China
Jing Zhang 0069 — Beijing Jiaotong University, School of Electronic and Information Engineering, Frontiers Science Center for Smart High-speed Railway System, China
Jing Zhang 0070 — University of Science and Technology of China, School of Management, Hefei, China
Jing Zhang 0071 — University of Sangmyung, Department of Emotion Engineering, Seoul, South Korea
Jing Zhang 0072 — Chang'an University, College of Geology Engineering and Geomatics, Xi'an, China (and 1 more)
Jing Zhang 0073 — Harbin Engineering University, College of Information and Communication Engineering, China
Jing Zhang 0074 — Zhengzhou Preschool Education College, China
Jing Zhang 0075 — Jilin University of Architecture and Technology, Basic Science Department, Changchun, China
Jing Zhang 0076 — Southeast University, School of Cyber Sciences and Engineering, Nanjing, China
Jing Zhang 0077 — Hainan University, School of Information and Communication Engineering, Haikou, China
Jing Zhang 0078 — Anhui University of Finance and Economics, School of Finance, Bengbu, China (and 1 more)
Jing Zhang 0079 — Lanzhou University, School of Economic, China
Jing Zhang 0080 — Beijing University of Technology, Faculty of Architecture, Civil and Transportation Engineering, China (and 1 more)
Jing Zhang 0082 — Panzhihua University, School of Mathematics and Computer Science, China (and 1 more)
Jing Zhang 0083 — Harbin Engineering University, College of Computer Science and Technology, China (and 3 more)
Jing Zhang 0084 — Hebei University of Technology, School of Economics and Management, Tianjin, China
Jing Zhang 0085 — Nanjing University of Science and Technology, School of Automation, China
Jing Zhang 0086 — Normandie University, INSA Rouen, France
Jing Zhang 0087 — University of Michigan, Computer Science and Engineering, MI, USA
Jing Zhang 0088 — Wuhan University of Technology, Department of Computer Science, China

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2020 – today

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2024
[c5]
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Ziheng Duan, Siwei Xu, Cheyu Lee, Dylan Riffle, Jing Zhang:
iMIRACLE: An Iterative Multi-View Graph Neural Network to Model Intercellular Gene Regulation From Spatial Transcriptomic Data. CIKM 2024: 538-548
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Siwei Xu, Junhao Liu, Jing Zhang:
scACT: Accurate Cross-modality Translation via Cycle-consistent Training from Unpaired Single-cell Data. CIKM 2024: 2722-2731
2023
[j17]
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Ziheng Duan, Yi Dai, Ahyeon Hwang, Cheyu Lee, Kaichi Xie, Chutong Xiao, Min Xu, Matthew J. Girgenti, Jing Zhang:
iHerd: an integrative hierarchical graph representation learning framework to quantify network changes and prioritize risk genes in disease. PLoS Comput. Biol. 19(9) (2023)
2022
[j16]
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Aviral Chharia, Rahul Upadhyay, Vinay Kumar, Chao Cheng, Jing Zhang, Tianyang Wang, Min Xu:
Deep-Precognitive Diagnosis: Preventing Future Pandemics by Novel Disease Detection With Biologically-Inspired Conv-Fuzzy Network. IEEE Access 10: 23167-23185 (2022)
[j15]
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Siwei Xu, Mario Skarica, Ahyeon Hwang, Yi Dai, Cheyu Lee, Matthew J. Girgenti, Jing Zhang:
Translator: A Transfer Learning Approach to Facilitate Single-Cell ATAC-Seq Data Analysis from Reference Dataset. J. Comput. Biol. 29(7): 619-633 (2022)
[j14]
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Xiangrui Zeng, Ziqian Lin, Mostofa Rafid Uddin, Bo Zhou, Chao Cheng, Jing Zhang, Zachary Freyberg, Min Xu:
Structure Detection in Three-Dimensional Cellular Cryoelectron Tomograms by Reconstructing Two-Dimensional Annotated Tilt Series. J. Comput. Biol. 29(8): 932-941 (2022)
[j13]
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Cheyu Lee, Yuhang Chen, Ziheng Duan, Min Xu, Matthew J. Girgenti, Ke Xu, Mark Gerstein, Jing Zhang:
Venus: An efficient virus infection detection and fusion site discovery method using single-cell and bulk RNA-seq data. PLoS Comput. Biol. 18(10): 1010636 (2022)
[c3]
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Tianyang Wang, Bo Li, Jing Zhang, Xiangrui Zeng, Mostofa Rafid Uddin, Wei Wu, Min Xu:
Deep Active Learning for Cryo-Electron Tomography Classification. ICIP 2022: 1611-1615
[c2]
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Haoyi Zhu, Chuting Wang, Yuanxin Wang, Zhaoxin Fan, Mostofa Rafid Uddin, Xin Gao, Jing Zhang, Xiangrui Zeng, Min Xu:
Unsupervised Multi-Task Learning for 3D Subtomogram Image Alignment, Clustering and Segmentation. ICIP 2022: 2751-2755
2021
[j12]
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  - journals/bioinformatics/DuWZZCZXX21
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Xuefeng Du, Haohan Wang, Zhenxi Zhu, Xiangrui Zeng, Yi-Wei Chang, Jing Zhang, Eric P. Xing, Min Xu:
Active learning to classify macromolecular structures in situ for less supervision in cryo-electron tomography. Bioinform. 37(16): 2340-2346 (2021)
[j11]
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Zhanlin Chen, Jing Zhang, Jason Liu, Yi Dai, Donghoon Lee, Martin Renqiang Min, Min Xu, Mark Gerstein:
DECODE: a Deep-learning framework for Condensing enhancers and refining boundaries with large-scale functional assays. Bioinform. 37(Supplement): 280-288 (2021)
[j10]
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Jason Liu, Daniel J. Spakowicz, Garrett I. Ash, Rebecca Hoyd, Rohan Ahluwalia, Andrew Zhang, Shaoke Lou, Donghoon Lee, Jing Zhang, Carolyn Presley, Ann Greene, Matthew Stults-Kolehmainen, Laura M. Nally, Julien S. Baker, Lisa M. Fucito, Stuart A. Weinzimer, Andrew V. Papachristos, Mark Gerstein:
Bayesian structural time series for biomedical sensor data: A flexible modeling framework for evaluating interventions. PLoS Comput. Biol. 17(8) (2021)
[c1]
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Yuchen Zeng, Gregory Howe, Kai Yi, Xiangrui Zeng, Jing Zhang, Yi-Wei Chang, Min Xu:
Unsupervised Domain Alignment Based Open Set Structural Recognition of Macromolecules Captured By Cryo-Electron Tomography. ICIP 2021: 106-110
[i2]
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  - journals/corr/abs-2102-12040
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Xuefeng Du, Haohan Wang, Zhenxi Zhu, Xiangrui Zeng, Yi-Wei Chang, Jing Zhang, Eric Poe Xing, Min Xu:
Active Learning to Classify Macromolecular Structures in situ for Less Supervision in Cryo-Electron Tomography. CoRR abs/2102.12040 (2021)
[i1]
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Zhanlin Chen, Philip Tuckman, Jeremy Goldwasser, Jing Zhang, Mark Gerstein:
Forest Fire Clustering: Cluster-oriented Label Propagation Clustering and Monte Carlo Verification Inspired by Forest Fire Dynamics. CoRR abs/2103.11802 (2021)
2020
[j9]
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Feiyang Chen, Ying Jiang, Xiangrui Zeng, Jing Zhang, Xin Gao, Min Xu:
PUB-SalNet: A Pre-Trained Unsupervised Self-Aware Backpropagation Network for Biomedical Salient Segmentation. Algorithms 13(5): 126 (2020)
[j8]
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Shaoke Lou, Tianxiao Li, Xiangmeng Kong, Jing Zhang, Jason Liu, Donghoon Lee, Mark Gerstein:
TopicNet: a framework for measuring transcriptional regulatory network change. Bioinform. 36(Supplement-1): i474-i481 (2020)
[j7]
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Jing Zhang, Jason Liu, Donghoon Lee, Shaoke Lou, Zhanlin Chen, Gamze Gürsoy, Mark Gerstein:
DiNeR: a Differential graphical model for analysis of co-regulation Network Rewiring. BMC Bioinform. 21(1): 281 (2020)
[j6]
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Jing Zhang, Jason Liu, Patrick D. McGillivray, Caroline Yi, Lucas Lochovsky, Donghoon Lee, Mark Gerstein:
NIMBus: a negative binomial regression based Integrative Method for mutation Burden Analysis. BMC Bioinform. 21(1): 474 (2020)
[j5]
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  - journals/nature/RheinbayNAWSTHH20
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Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel Gonzalez-Perez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Søren Brunak, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, J. Lynn Fink, Joan Frigola, Carlo Gambacorti Passerini, Dale W. Garsed, Gad Getz, Ivo Glynne Gut, David Haan, Arif Ozgun Harmanci, Mohamed Helmy, Ermin Hodzic, José M. G. Izarzugaza, Jong K. Kim, Jan O. Korbel, Erik Larsson, Shantao Li, Xiaotong Li, Shaoke Lou, Kathleen Marchal, Iñigo Martincorena, Alexander Martínez-Fundichely, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Marta Paczkowska, Kiejung Park, Jakob Skou Pedersen, Tirso Pons, Sergio Pulido-Tamayo, Iker Reyes-Salazar, Matthew A. Reyna, Carlota Rubio-Perez, Süleyman Cenk Sahinalp, Leonidas Salichos, Mark Shackleton, Raunak Shrestha, Alfonso Valencia, Miguel Vazquez, Lieven P. C. Verbeke, Jiayin Wang, Jonathan Warrell, Sebastian M. Waszak, Joachim Weischenfeldt, Guanming Wu, Jun Yu, Xuanping Zhang, Yan Zhang, Zhongming Zhao, Lihua Zou, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David D. L. Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Milana Frenkel-Morgenstern, Dmitry A. Gordenin, Barbara Hutter, David T. W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Eunjung Alice Lee, Jake June-Koo Lee, Andy G. Lynch, Geoff MacIntyre, Florian Markowetz, Matthew Meyerson, Satoru Miyano, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Steven A. Roberts, Bernardo Rodriguez-Martin, Ralph Scully, David Torrents, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Lixing Yang, Sung-Soo Yoon, Jorge Zamora:
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nat. 578(7793): 102-111 (2020)
[j4]
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Donghoon Lee, Jing Zhang, Jason Liu, Mark Gerstein:
Epigenome-based splicing prediction using a recurrent neural network. PLoS Comput. Biol. 16(6) (2020)
[j3]
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Ran Li, Liangyong Yu, Bo Zhou, Xiangrui Zeng, Zhenyu Wang, Xiaoyan Yang, Jing Zhang, Xin Gao, Rui Jiang, Min Xu:
Few-shot learning for classification of novel macromolecular structures in cryo-electron tomograms. PLoS Comput. Biol. 16(11) (2020)
[j2]
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  - journals/sensors/YangMZGX20
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Yufeng Yang, Yixiao Ma, Jing Zhang, Xin Gao, Min Xu:
AttPNet: Attention-Based Deep Neural Network for 3D Point Set Analysis. Sensors 20(19): 5455 (2020)

2010 – 2019

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2018
[j1]
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Lucas Lochovsky, Jing Zhang, Mark Gerstein:
MOAT: efficient detection of highly mutated regions with the Mutations Overburdening Annotations Tool. Bioinform. 34(6): 1031-1033 (2018)

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