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7th ISBRA 2011: Changsha, China
- Jianer Chen, Jianxin Wang, Alexander Zelikovsky
:
Bioinformatics Research and Applications - 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011. Proceedings. Lecture Notes in Computer Science 6674, Springer 2011, ISBN 978-3-642-21259-8 - Russell Schwartz:
Phylogenetics of Heterogeneous Samples - (Keynote Talk). 1 - David Sankoff:
OMG! Orthologs for Multiple Genomes - Competing Formulations - (Keynote Talk). 2-3 - Bernard M. E. Moret
Phylogenetic Analysis of Whole Genomes - (Keynote Talk). 4-7 - Liping Wei:
Genetic and Pharmacogenetic Studies of Neuropsychiatric Disorders: Increasingly Critical Roles of Bioinformatics Research and Applications - (Keynote Talk). 8-10 - Eric P. Xing:
Genome-Phenome Association Analysis of Complex Diseases a Structured Sparse Regression Approach - (Keynote Talk). 11 - Jun Ren, Jianxin Wang, Min Li, Huan Wang, Binbin Liu:
Prediction of Essential Proteins by Integration of PPI Network Topology and Protein Complexes Information. 12-24 - Fei Guo, Lusheng Wang
Computing the Protein Binding Sites. 25-36 - David Hoksza
SETTER - RNA SEcondary sTructure-based TERtiary Structure Similarity Algorithm. 37-48 - Yu-Cheng Liu, Po-I Chiu, Hsuan-Cheng Huang, Vincent S. Tseng:
Prediction of Essential Genes by Mining Gene Ontology Semantics. 49-60 - Xiaohua Wan, Fa Zhang, Qi Chu, Zhiyong Liu:
High-Performance Blob-Based Iterative Reconstruction of Electron Tomography on Multi-GPUs. 61-72 - Ghada Badr, Marcel Turcotte
Component-Based Matching for Multiple Interacting RNA Sequences. 73-86 - Huan Wang, Min Li, Jianxin Wang, Yi Pan:
A New Method for Identifying Essential Proteins Based on Edge Clustering Coefficient. 87-98 - Chunfang Zheng, David Sankoff:
Gene Order in Rosid Phylogeny, Inferred from Pairwise Syntenies among Extant Genomes. 99-110 - Luqman Hodgkinson, Richard M. Karp:
Algorithms to Detect Multiprotein Modularity Conserved during Evolution. 111-122 - Krister M. Swenson, Eric C. H. Chen, Nicholas D. Pattengale, David Sankoff:
The Kernel of Maximum Agreement Subtrees. 123-135 - Jianyi Yang
A Consensus Approach to Predicting Protein Contact Map via Logistic Regression. 136-147 - Pawel Górecki
A Linear Time Algorithm for Error-Corrected Reconciliation of Unrooted Gene Trees. 148-159 - Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano:
Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation. 160-171 - Harris T. Lin
The Deep Coalescence Consensus Tree Problem is Pareto on Clusters. 172-183 - Ruchi Chaudhary, J. Gordon Burleigh, David Fernández-Baca:
Fast Local Search for Unrooted Robinson-Foulds Supertrees. 184-196 - Yu Lin
A Metric for Phylogenetic Trees Based on Matching. 197-208 - Pavol Jancura
Describing the Orthology Signal in a PPI Network at a Functional, Complex Level. 209-226 - Ruchi Chaudhary, J. Gordon Burleigh, Oliver Eulenstein:
Algorithms for Rapid Error Correction for the Gene Duplication Problem. 227-239 - Yi-Tsung Tang, Hung-Yu Kao:
TransDomain: A Transitive Domain-Based Method in Protein-Protein Interaction Prediction. 240-252 - Hui Li, Lauren Scott, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge, William M. Southerland:
Rapid and Accurate Generation of Peptide Sequence Tags with a Graph Search Approach. 253-261 - Vadim Mozhayskiy, Ilias Tagkopoulos:
In Silico Evolution of Multi-scale Microbial Systems in the Presence of Mobile Genetic Elements and Horizontal Gene Transfer. 262-273 - Jirí Kléma
Comparative Evaluation of Set-Level Techniques in Microarray Classification. 274-285 - Pingzhao Hu
Gene Network Modules-Based Liner Discriminant Analysis of Microarray Gene Expression Data. 286-296 - Bin Fu, Louxin Zhang:
A Polynomial Algebra Method for Computing Exemplar Breakpoint Distance. 297-305 - John D. Eblen, Charles A. Phillips, Gary L. Rogers, Michael A. Langston:
The Maximum Clique Enumeration Problem: Algorithms, Applications and Implementations. 306-319 - Yan Fu, Rong Pan, Qiang Yang, Wen Gao:
Query-Adaptive Ranking with Support Vector Machines for Protein Homology Prediction. 320-331 - Chaojun Li, Jieyue He, Baoliu Ye, Wei Zhong:
A Novel Core-Attachment Based Greedy Search Method for Mining Functional Modules in Protein Interaction Networks. 332-343 - Xiuwei Zhang, Bernard M. E. Moret
ProPhyC: A Probabilistic Phylogenetic Model for Refining Regulatory Networks. 344-357 - Andrea Szabóová, Ondrej Kuzelka
Prediction of DNA-Binding Propensity of Proteins by the Ball-Histogram Method. 358-367 - Jonathan Q. Jiang:
Multi-label Correlated Semi-supervised Learning for Protein Function Prediction. 368-379 - Felipe Lessa, Daniele Martins Neto, Kátia Guimarães, Marcelo M. Brigido
Regene: Automatic Construction of a Multiple Component Dirichlet Mixture Priors Covariance Model to Identify Non-coding RNA. 380-391 - Marius Nicolae, Ion I. Mandoiu
Accurate Estimation of Gene Expression Levels from DGE Sequencing Data. 392-403 - Han Wang, John Fazekas, Matthew Booth, Qi Liu, Dongsheng Che:
An Integrative Approach for Genomic Island Prediction in Prokaryotic Genomes. 404-415 - Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton
A Systematic Comparison of Genome Scale Clustering Algorithms - (Extended Abstract). 416-427 - Wen-Chieh Chang, Sudheer Vakati, Roland Krause
Mining Biological Interaction Networks Using Weighted Quasi-Bicliques. 428-439 - Ján Manuch, Murray Patterson, Arvind Gupta:
Towards a Characterisation of the Generalised Cladistic Character Compatibility Problem for Non-branching Character Trees. 440-451
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