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Qi Liu 0019

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affiliation: Tongji University, College of Life Science and Biotechnology, Shanghai, China

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Qi Liu — disambiguation page
Qi Liu 0001 — Nanjing University of Information Science and Technology, School of Software, Nanjing, China (and 3 more)
Qi Liu 0002 — Hubei University for Nationalities, Department of Mathematics, Enshi, China
Qi Liu 0003 — University of Science and Technology of China, School of Artifical Intelligence and Data Science, State Key Laboratory of Cognitive Intelligence, Hefei, China (and 1 more)
Qi Liu 0004 — Xi'an University of Science and Technology, School of Energy, China
Qi Liu 0005 — South China University of Technology, School of Future Technology, Guangzhou, China (and 2 more)
Qi Liu 0006 — Shanghai Jiao Tong University, School of Biomedical Engineering, China
Qi Liu 0007 — Tsinghua University, State Key Laboratory of Automotive Safety and Energy / Department of Automotive Engineering, Beijing, China
Qi Liu 0008 — Virginia Tech, Blacksburg, VA, USA
Qi Liu 0009 — Carleton University, Department of Systems and Computer Engineering, Ottawa, ON, Canada

Qi Liu 0010 — Fudan University, State Key Laboratory of ASIC and System, Frontier Institute of Chip and System, Shanghai, China (and 2 more)
Qi Liu 0011 — China University of Petroleum, College of Mechanical and Electronic Engineering, Qingdao, China
Qi Liu 0012 — Mount Sinai Hospital, New York, NY, USA (and 1 more)
Qi Liu 0013 — Hangzhou Dianzi University, Smart City Research Center of Zhejiang Province, China (and 1 more)
Qi Liu 0014 — Northeastern University, School of Information Science and Engineering, Shenyang, China
Qi Liu 0015 — Zhengzhou University, School of Software Technology, China
Qi Liu 0016 — Hainan University, State Key Laboratory of Marine Resource Utilization in South China Sea / School of Information and Communication Engineering, Haikou, China
Qi Liu 0017 — Lehigh University, Bethlehem, PA, USA (and 1 more)
Qi Liu 0018 — Shanghai Jiao Tong University, MoE Key Lab of Artificial Intelligence, Shanghai, China (and 1 more)
Qi Liu 0020 — Beijing Institute of Technology, School of Mechanical Engineering, Beijing, China
Qi Liu 0021 — Beijing Institute of Technology, School of Mathematics and Statistics, Beijing, China
Qi Liu 0022 — University of Illinois at Urbana-Champaign, Department of Mathematics, Urbana, IL, USA
Qi Liu 0023 — Karlsruhe Institute of Technology, Institute for Automation and Applied Informatics, Eggenstein-Leopoldshafen, Germany
Qi Liu 0024 — Vanderbilt University Medical Center, Department of Biostatistics, Nashville, TN, USA (and 2 more)
Qi Liu 0025 — China University of Geosciences, School of Economics and Management, Wuhan, China
Qi Liu 0026 — Southeast University, School of Transportation, Nanjing, China
Qi Liu 0027 — Harbin Institute of Technology, Department of Control Science and Engineering, Shenzhen, China
Qi Liu 0028 — Sun Yat-Sen University, School of Mathematics, Guangzhou, China
Qi Liu 0029 — Shandong University, School of Information Science and Engineering, Qingdao, China
Qi Liu 0030 — Southeast University, School of Energy and Environment,, Nanjing, China
Qi Liu 0031 — Southeast University, National Mobile Communications Research Laboratory, Nanjing, China
Qi Liu 0032 — Harbin Institute of Technology, State Key Laboratory of Robotics and System, Harbin, China
Qi Liu 0033 — Shenyang Agriculture University, College of the Land and the Environment, Shenyang, China (and 1 more)
Qi Liu 0034 — Zhejiang Normal University, College of Mathematics and Computer Science, Jinhua, China
Qi Liu 0035 — Huangshan University, School of Information Engineering, Huangshan, China (and 2 more)
Qi Liu 0036 — Guangdong University of Technology, School of Information Engineering, Department of Electromechanical Engineering, Guangzhou, China
Qi Liu 0037 — University of Chinese Academy of Sciences, College of Earth and Planetary Sciences, Beijing, China (and 1 more)
Qi Liu 0038 — University of Science and Technology of China, School of Earth and Space Sciences, Hefei, China
Qi Liu 0039 — Chinese Academy of Agricultural Sciences, Beijing, China
Qi Liu 0040 — Beijing University of Civil Engineering and Architecture, School of Mechanical-Electronic and Vehicle Engineering, Beijing, China
Qi Liu 0041 — University of Science and Technology Beijing, School of Computer and Communication Engineering, USTB-EEasyTech Joint Lab of Artificial Intelligence, Beijing, China
Qi Liu 0042 — City University of Hong Kong, Department of Electrical Engineering, Laboratory for Computational Neuroscience, Hong Kong
Qi Liu 0043 — New York University, Department of Civil and Urban Engineering, New York, NY, USA
Qi Liu 0044 — State Grid Xuzhou Power Supply Company, Xuzhou, China (and 1 more)
Qi Liu 0045 — Sichuan University, Business School, Chengdu, China
Qi Liu 0046 — Sichuan University, School of Electrical Engineering and Information, Chengdu, China
Qi Liu 0047 — Xi'an Jiaotong University, School of Management, Key Lab of the Ministry of Education for Process Control and Efficiency Engineering, Xi'an, China
Qi Liu 0048 — Chinese Academy of Sciences, Beijing Institute of Genomics, Beijing, China
Qi Liu 0049 — University of Hong Kong, Department of Computer Science, Hong Kong (and 2 more)
Qi Liu 0050 — Tencent, WeChat Search Application Department, Shenzhen, China
Qi Liu 0051 — Universitat Politècnica de Catalunya, Department of Mathematics, Barcelona, Spain
Qi Liu 0052 — Unsupervised Inc., Boulder, CO, USA (and 2 more)
Qi Liu 0053 — East China Jiaotong University, School of Information Engineering, Nanchang, China
Qi Liu 0054 — Northwestern Polytechnical University, School of Electronics and Information, Xi'an, China (and 2 more)
Qi Liu 0055 — National University of Singapore, NUS Business School, Singapore
Qi Liu 0056 — Southeast University, School of Computer Science and Engineering, Nanjing, China (and 1 more)
Qi Liu 0057 — Shanghai Jiao Tong University, Department of Automation, Shanghai, China
Qi Liu 0058 — National University of Defense Technology, College of Electronic Science and Technology, Changsha, China
Qi Liu 0059 — Hunan University, College of Electrical and Information Engineering, Changsha, China
Qi Liu 0060 — Hohai University, College of Energy and Electrical Engineering, Nanjing, China
Qi Liu 0061 — Sun Yat-sen University, Guangzhou, China
Qi Liu 0062 — Tokyo Institute of Technology, Department of Systems and Control Engineering, Tokyo, Japan (and 1 more)
Qi Liu 0063 — Woosuk University, Department of Education, Wanju, South Korea
Qi Liu 0064 — University of Chinese Academy of Sciences, School of Artificial Intelligence, Beijing, China
Qi Liu 0065 — Qilu University of Technology, Shandong Academy of Sciences, Shandong Computer Science Center (National Supercomputer Center in Jinan), Key Laboratory of Computing Power Network and Information Security, Ministry of Education, Jinan, China
Qi Liu 0066 — Wuhan University of Technology, School of Mechanical and Electronic Engineering, Wuhan, China
Qi Liu 0067 — Beijing Institute of Technology, School of Computer Science and Technology, Beijing, China
Qi Liu 0068 — Beijing Institute of Technology, School of Cyberspace Science and Technology, Beijing, China
Qi Liu 0069 — University of Roehampton, Roehampton Business School, London, UK
Qi Liu 0070 — Shandong University, Qingdao, China
Qi Liu 0071 — Renmin University of China, Beijing, China
Qi Liu 0072 — Xiamen University of Technology, School of Mechanical Engineering and Automotive Engineering, China
Qi Liu 0073 — Beibu Gulf University, School of Machinery and Shipbuilding, China
Qi Liu 0074 — PLA, No.92493 Troops of PLA, Unit 60, Huludao, China
Qi Liu 0075 — Harbin Institute of Technology, School of Electrical Engineering and Automation, Harbin, China
Qi Liu 0076 — South China University of Technology, School of Design, Guangzhou Higher Education Mega Centre, Guangzhou, China
Qi Liu 0077 — City University of Hong Kong, Department of Physics, Hong Kong (and 1 more)
Qi Liu 0078 — Guangdong University of Science and Technology, Finance & Economics School (FES), China
Qi Liu 0079 — Hubei University of Technology, School of Computer Science, Wuhan, China
Qi Liu 0080 — Peking University, Academy for Advanced Interdisciplinary Studies, Center for Quantitative Biology and Peking-Tsinghua Center for Life Sciences, Beijing, China

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2020 – today

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2024
[j40]
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Tianyi Ding, Shaliu Fu, Xiaoyu Zhang, Fan Yang, Jixing Zhang, Haowen Xu, Jiaqi Yang, Chaoqun Chen, Yibing Shi, Yiran Bai, Wannian Li, Xindi Chang, Shanjin Wang, Chao Zhang, Qi Liu, He Zhang:
Inter3D: Capture of TAD Reorganization Endows Variant Patterns of Gene Transcription. Genom. Proteom. Bioinform. 22(3) (2024)
[j39]
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Yicheng Gao, Qi Liu:
Delineating cell types with transcriptional kinetics. Nat. Comput. Sci. 4(9): 657-658 (2024)
[j38]
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Yicheng Gao, Zhiting Wei, Kejing Dong, Ke Chen, Jingya Yang, Guohui Chuai, Qi Liu:
Toward subtask-decomposition-based learning and benchmarking for predicting genetic perturbation outcomes and beyond. Nat. Comput. Sci. 4(10): 773-785 (2024)
2023
[j37]
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Qinhu Zhang, Pengrui Teng, Siguo Wang, Ying He, Zhen Cui, Zhenghao Guo, Yixin Liu, Changan Yuan, Qi Liu, De-Shuang Huang:
Computational prediction and characterization of cell-type-specific and shared binding sites. Bioinform. 39(1) (2023)
[j36]
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Kainan Yao, Xiaowen Wang, Wannian Li, Hongming Zhu, Yizhi Jiang, Yulong Li, Tongxuan Tian, Zhaoyi Yang, Qi Liu, Qin Liu:
Semi-supervised heterogeneous graph contrastive learning for drug-target interaction prediction. Comput. Biol. Medicine 163: 107199 (2023)
[j35]
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Gongchen Zhang, Chenyu Zhu, Xiaohan Chen, Jifang Yan, Dongyu Xue, Zixuan Wei, Guohui Chuai, Qi Liu:
Systematic Exploration of Optimized Base Editing gRNA Design and Pleiotropic Effects with BExplorer. Genom. Proteom. Bioinform. 21(6): 1237-1245 (2023)
[j34]
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Yicheng Gao, Yuli Gao, Yuxiao Fan, Chengyu Zhu, Zhiting Wei, Chi Zhou, Guohui Chuai, Qinchang Chen, He Zhang, Qi Liu:
Pan-Peptide Meta Learning for T-cell receptor-antigen binding recognition. Nat. Mac. Intell. 5(3): 236-249 (2023)
[j33]
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Yicheng Gao, Yuli Gao, Kejing Dong, Siqi Wu, Qi Liu:
Reply to: The pitfalls of negative data bias for the T-cell epitope specificity challenge. Nat. Mac. Intell. 5(10): 1063-1065 (2023)
2022
[j32]
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Tengbo Zhang, Yaxu Li, Yanrong Yang, Linjun Weng, Zhiqiang Wu, Jiali Zhu, Jieling Qin, Qi Liu, Ping Wang:
iCRISEE: an integrative analysis of CRISPR screen by reducing false positive hits. Briefings Bioinform. 23(1) (2022)
[j31]
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Xiaowen Wang, Hongming Zhu, Yizhi Jiang, Yulong Li, Chen Tang, Xiaohan Chen, Yunjie Li, Qi Liu, Qin Liu:
PRODeepSyn: predicting anticancer synergistic drug combinations by embedding cell lines with protein-protein interaction network. Briefings Bioinform. 23(2) (2022)
[j30]
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Zhiting Wei, Sheng Zhu, Xiaohan Chen, Chen-Yu Zhu, Bin Duan, Qi Liu:
DrSim: Similarity Learning for Transcriptional Phenotypic Drug Discovery. Genom. Proteom. Bioinform. 20(5): 1028-1036 (2022)
[j29]
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Qinhu Zhang, Ying He, Siguo Wang, Zhanheng Chen, Zhen-Hao Guo, Zhen Cui, Qi Liu, De-Shuang Huang:
Base-resolution prediction of transcription factor binding signals by a deep learning framework. PLoS Comput. Biol. 18(3) (2022)
2021
[j28]
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Zhiting Wei, Yuli Gao, Fangliangzi Meng, Xin Chen, Yukang Gong, Chenyu Zhu, Bin Ju, Chao Zhang, Zhongmin Liu, Qi Liu:
iDMer: an integrative and mechanism-driven response system for identifying compound interventions for sudden virus outbreak. Briefings Bioinform. 22(2): 976-987 (2021)
[j27]
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Qinhu Zhang, Siguo Wang, Zhanheng Chen, Ying He, Qi Liu, De-Shuang Huang:
Locating transcription factor binding sites by fully convolutional neural network. Briefings Bioinform. 22(5) (2021)
[j26]
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Shaoqi Chen, Dongyu Xue, Guohui Chuai, Qiang Yang, Qi Liu:
FL-QSAR: a federated learning-based QSAR prototype for collaborative drug discovery. Bioinform. 36(22-23): 5492-5498 (2021)
2020
[j25]
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Yuli Gao, Guohui Chuai, Weichuan Yu, Shen Qu, Qi Liu:
Data imbalance in CRISPR off-target prediction. Briefings Bioinform. 21(4): 1448-1454 (2020)

2010 – 2019

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2019
[j24]
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Wenzheng Bao, Bin Yang, De-Shuang Huang, Dong Wang, Qi Liu, Yuehui Chen, Rong Bao:
IMKPse: Identification of Protein Malonylation Sites by the Key Features Into General PseAAC. IEEE Access 7: 54073-54083 (2019)
[j23]
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Chen-Yu Zhu, Chi Zhou, Yun-Qin Chen, Ai-Zong Shen, Zong-Ming Guo, Zhao-Yi Yang, Xiangyun Ye, Shen Qu, Jia Wei, Qi Liu:
C³: Consensus Cancer Driver Gene Caller. Genom. Proteom. Bioinform. 17(3): 311-318 (2019)
[j22]
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Quan Zou, Qi Liu:
Advanced Machine Learning Techniques for Bioinformatics. IEEE ACM Trans. Comput. Biol. Bioinform. 16(4): 1182-1183 (2019)
[c4]
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Qi Liu, Wenzheng Bao, Zhuo Wang:
MPdeep: Medical Procession with Deep Learning. ICIC (2) 2019: 717-725
2018
[j21]
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Jifang Yan, Guohui Chuai, Chi Zhou, Chen-Yu Zhu, Jing Yang, Chao Zhang, Feng Gu, Han Xu, Jia Wei, Qi Liu:
Benchmarking CRISPR on-target sgRNA design. Briefings Bioinform. 19(4): 721-724 (2018)
2015
[j20]
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Wei Zhang, Lijuan Ji, Yanan Chen, Kailin Tang, Haiping Wang, Ruixin Zhu, Wei Jia, Zhiwei Cao, Qi Liu:
When drug discovery meets web search: Learning to Rank for ligand-based virtual screening. J. Cheminformatics 7: 5 (2015)
2014
[j19]
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Qi Liu, Han Zhou, Ruixin Zhu, Ying Xu, Zhiwei Cao:
Reconsideration of in silico siRNA design from a perspective of heterogeneous data integration: problems and solutions. Briefings Bioinform. 15(2): 292-305 (2014)
[j18]
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Haoqi Sun, Haiping Wang, Ruixin Zhu, Kailin Tang, Qin Gong, Juan Cui, Zhiwei Cao, Qi Liu:
iPEAP: integrating multiple omics and genetic data for pathway enrichment analysis. Bioinform. 30(5): 737-739 (2014)
2013
[j17]
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Yi Sun, Ruixin Zhu, Hao Ye, Kailin Tang, Jing Zhao, Yujia Chen, Qi Liu, Zhiwei Cao:
Towards a bioinformatics analysis of anti-Alzheimer's herbal medicines from a target network perspective. Briefings Bioinform. 14(3): 327-343 (2013)
[j16]
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Hong Kang, Kailin Tang, Qi Liu, Yi Sun, Qi Huang, Ruixin Zhu, Jun Gao, Duanfeng Zhang, Chenggang Huang, Zhiwei Cao:
HIM-herbal ingredients in-vivo metabolism database. J. Cheminformatics 5: 28 (2013)
[j15]
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Xiaoxiao Shi, Qi Liu, Wei Fan, Philip S. Yu:
Transfer across Completely Different Feature Spaces via Spectral Embedding. IEEE Trans. Knowl. Data Eng. 25(4): 906-918 (2013)
2012
[j14]
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Pei Li, Guoli Ji, Min Dong, Emily Schmidt, Douglas Lenox, Liangliang Chen, Qi Liu, Lin Liu, Jie Zhang, Chun Liang:
CBrowse: a SAM/BAM-based contig browser for transcriptome assembly visualization and analysis. Bioinform. 28(18): 2382-2384 (2012)
[j13]
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Tianlei Xu, Ruixin Zhu, Qi Liu, Zhi-Wei Cao:
Quantitatively integrating molecular structure and bioactivity profile evidence into drug-target relationship analysis. BMC Bioinform. 13: 75 (2012)
[j12]
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Jun Gao, Dongsheng Che, Vincent Wenchen Zheng, Ruixin Zhu, Qi Liu:
Integrated QSAR study for inhibitors of hedgehog signal pathway against multiple cell lines: a collaborative filtering method. BMC Bioinform. 13: 186 (2012)
[j11]
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Dingfeng Wu, Qi Huang, Yida Zhang, Qingchen Zhang, Qi Liu, Jun Gao, Zhi-Wei Cao, Ruixin Zhu:
Screening of selective histone deacetylase inhibitors by proteochemometric modeling. BMC Bioinform. 13: 212 (2012)
[j10]
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Hong Kang, Zhen Sheng, Ruixin Zhu, Qi Huang, Qi Liu, Zhiwei Cao:
Virtual Drug Screen Schema Based on Multiview Similarity Integration and Ranking Aggregation. J. Chem. Inf. Model. 52(3): 834-843 (2012)
[j9]
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Xin Zhao, Qi Liu, Qingqing Cai, Yanyun Li, Congjian Xu, Yixue Li, Zuofeng Li, Xiaoyan Zhang:
Dr.VIS: a database of human disease-related viral integration sites. Nucleic Acids Res. 40(Database-Issue): 1041-1046 (2012)
2011
[j8]
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Qi Liu, Han Zhou, Lin Liu, Xi Chen, Ruixin Zhu, Zhi-Wei Cao:
Multi-target QSAR Modelling in the Analysis and Design of HIV-HCV Co-Inhibitors : An In-silico Study. BMC Bioinform. 12: 294 (2011)
[j7]
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Tianli Dai, Qi Liu, Jun Gao, Zhiwei Cao, Ruixin Zhu:
A new protein-ligand binding sites prediction method based on the integration of protein sequence conservation information. BMC Bioinform. 12(S-14): S9 (2011)
[j6]
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Hao Ye, Li Ye, Hong Kang, Duanfeng Zhang, Lin Tao, Kailin Tang, Xueping Liu, Ruixin Zhu, Qi Liu, Yuzong Chen, Yixue Li, Zhi-Wei Cao:
HIT: linking herbal active ingredients to targets. Nucleic Acids Res. 39(Database-Issue): 1055-1059 (2011)
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Han Wang, John Fazekas, Matthew Booth, Qi Liu, Dongsheng Che:
An Integrative Approach for Genomic Island Prediction in Prokaryotic Genomes. ISBRA 2011: 404-415
2010
[j5]
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Qi Liu, Qian Xu, Vincent Wenchen Zheng, Hong Xue, Zhi-Wei Cao, Qiang Yang:
Multi-task learning for cross-platform siRNA efficacy prediction: an in-silico study. BMC Bioinform. 11: 181 (2010)
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Qi Liu, Juan Cui, Qiang Yang, Ying Xu:
In-silico prediction of blood-secretory human proteins using a ranking algorithm. BMC Bioinform. 11: 250 (2010)
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Xiaoxiao Shi, Qi Liu, Wei Fan, Philip S. Yu, Ruixin Zhu:
Transfer Learning on Heterogenous Feature Spaces via Spectral Transformation. ICDM 2010: 1049-1054
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Xiaoxiao Shi, Qi Liu, Wei Fan, Qiang Yang, Philip S. Yu:
Predictive Modeling with Heterogeneous Sources. SDM 2010: 814-825

2000 – 2009

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2009
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Qi Liu, Jinling Huang, Huiqing Liu, Ping Wan, Xiuzi Ye, Ying Xu:
Analyses of domains and domain fusions in human proto-oncogenes. BMC Bioinform. 10 (2009)
2008
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Juan Cui, Qi Liu, David Puett, Ying Xu:
Computational prediction of human proteins that can be secreted into the bloodstream. Bioinform. 24(20): 2370-2375 (2008)
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Qi Liu, Victor Olman, Huiqing Liu, Xiuzi Ye, Shilun Qiu, Ying Xu:
RNACluster: An integrated tool for RNA secondary structure comparison and clustering. J. Comput. Chem. 29(9): 1517-1526 (2008)

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