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Juliana S. Bernardes
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2020 – today
- 2023
- [j9]Nika Abdollahi, Lucile Jeusset, Anne Langlois De Septenville, Frédéric Davi, Juliana S. Bernardes:
Reconstructing B cell lineage trees with minimum spanning tree and genotype abundances. BMC Bioinform. 24(1): 70 (2023) - [c1]Gabriel Dominico, Juliana S. Bernardes, Leonardo L. Dorneles
, Márcio Dorn:
Multi-Objective Wrapper Differential Evolution with Guided Initial Population for Feature Selection. CEC 2023: 1-8 - 2022
- [j8]Nika Abdollahi
A multi-objective based clustering for inferring BCR clonal lineages from high-throughput B cell repertoire data. PLoS Comput. Biol. 18(8) (2022)
2010 – 2019
- 2018
- [j7]Nika Abdollahi, Alexandre Albani, Éric Anthony, Agnes Baud, Mélissa Cardon, Robert Clerc, Dariusz Czernecki, Romain Conte
Meet-U: Educating through research immersion. PLoS Comput. Biol. 14(3) (2018) - 2016
- [j6]Juliana S. Bernardes, Fabio R. J. Vieira, Gerson Zaverucha, Alessandra Carbone
A multi-objective optimization approach accurately resolves protein domain architectures. Bioinform. 32(3): 345-353 (2016) - [j5]Juliana S. Bernardes, Gerson Zaverucha, Catherine Vaquero, Alessandra Carbone
Improvement in Protein Domain Identification Is Reached by Breaking Consensus, with the Agreement of Many Profiles and Domain Co-occurrence. PLoS Comput. Biol. 12(7) (2016) - 2015
- [j4]Juliana S. Bernardes, Fabio R. J. Vieira, Lygia Costa, Gerson Zaverucha:
Evaluation and improvements of clustering algorithms for detecting remote homologous protein families. BMC Bioinform. 16: 34:1-34:14 (2015) - 2012
- [b1]Juliana S. Bernardes:
Combining evolution and machine learning for functional annotation and classification of remote homologous proteins. (Evolution et apprentissage automatique pour l'annotation fonctionnelle et la classification des homologies lointains en protéines). Pierre and Marie Curie University, Paris, France, 2012 - 2011
- [j3]Juliana S. Bernardes, Alessandra Carbone
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models. BMC Bioinform. 12: 83 (2011)
2000 – 2009
- 2008
- [j2]Juliana S. Bernardes, Jorge H. Fernandez, Ana Tereza Ribeiro de Vasconcelos
Structural descriptor database: a new tool for sequence-based functional site prediction. BMC Bioinform. 9 (2008) - 2007
- [j1]Juliana S. Bernardes, Alberto M. R. Dávila
Improving model construction of profile HMMs for remote homology detection through structural alignment. BMC Bioinform. 8 (2007) - [i1]Juliana S. Bernardes, Alberto M. R. Dávila, Vítor Santos Costa
A study of structural properties on profiles HMMs. CoRR abs/0704.2010 (2007)
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