default search action
Rachel Karchin
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
- [j22]Alicia M. Braxton
, Ashley L. Kiemen
3D genomic mapping reveals multifocality of human pancreatic precancers. Nat. 629(8012): 679-687 (2024) - 2023
- [j21]Benjamin Alexander Albert, Yunxiao Yang
Deep neural networks predict class I major histocompatibility complex epitope presentation and transfer learn neoepitope immunogenicity. Nat. Mac. Intell. 5(8): 861-872 (2023) - 2022
- [j20]Lily Zheng, Noushin Niknafs, Laura D. Wood, Rachel Karchin
Estimation of cancer cell fractions and clone trees from multi-region sequencing of tumors. Bioinform. 38(15): 3677-3683 (2022)
2010 – 2019
- 2017
- [j19]David L. Masica, Marco Dal Molin, Christopher L. Wolfgang, Tyler M. Tomita, Mohammad R. Ostovaneh, Amanda Blackford, Robert A. Moran, Joanna K. Law, Thomas Barkley, Michael Goggins, Marcia Irene Canto, Meredith E. Pittman, James R. Eshleman, Syed Z. Ali, Elliot K. Fishman
A novel approach for selecting combination clinical markers of pathology applied to a large retrospective cohort of surgically resected pancreatic cysts. J. Am. Medical Informatics Assoc. 24(1): 145-152 (2017) - 2016
- [j18]David L. Masica, Rachel Karchin
Towards Increasing the Clinical Relevance of In Silico Methods to Predict Pathogenic Missense Variants. PLoS Comput. Biol. 12(5) (2016) - [j17]Rachel Karchin
Genome Landscapes of Disease: Strategies to Predict the Phenotypic Consequences of Human Germline and Somatic Variation. PLoS Comput. Biol. 12(8) (2016) - 2015
- [j16]Noushin Niknafs, Violeta Beleva Guthrie, Daniel Q. Naiman, Rachel Karchin
SubClonal Hierarchy Inference from Somatic Mutations: Automatic Reconstruction of Cancer Evolutionary Trees from Multi-region Next Generation Sequencing. PLoS Comput. Biol. 11(10) (2015) - 2014
- [j15]Yun-Ching Chen, Christopher Douville, Cheng Wang, Noushin Niknafs, Grace H. T. Yeo
A Probabilistic Model to Predict Clinical Phenotypic Traits from Genome Sequencing. PLoS Comput. Biol. 10(9) (2014) - 2013
- [j14]Christopher Douville, Hannah Carter, Rick Kim, Noushin Niknafs, Mark Diekhans
CRAVAT: cancer-related analysis of variants toolkit. Bioinform. 29(5): 647-648 (2013) - [c5]Rachel Karchin, Michael F. Ochs, Joshua M. Stuart, Trey Ideker, Joel S. Bader:
Session Introduction. Pacific Symposium on Biocomputing 2013: 103-110 - 2012
- [c4]Rachel Karchin, Michael F. Ochs, Joshua M. Stuart, Joel S. Bader:
Session Introduction. Pacific Symposium on Biocomputing 2012: 1-6 - 2011
- [j13]Melissa S. Cline, Rachel Karchin
Using bioinformatics to predict the functional impact of SNVs. Bioinform. 27(4): 441-448 (2011) - [j12]Wing Chung Wong, Dewey Kim, Hannah Carter, Mark Diekhans
CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer. Bioinform. 27(15): 2147-2148 (2011) - [j11]Violeta Beleva Guthrie, Jennifer Allen, Manel Camps, Rachel Karchin
Network Models of TEM β-Lactamase Mutations Coevolving under Antibiotic Selection Show Modular Structure and Anticipate Evolutionary Trajectories. PLoS Comput. Biol. 7(9) (2011) - [c3]Michael F. Ochs, Rachel Karchin, Habtom W. Ressom, Robert Gentleman:
Workshop Introduction. Pacific Symposium on Biocomputing 2011: 364-368
2000 – 2009
- 2009
- [j10]Rachel Karchin
Next generation tools for the annotation of human SNPs. Briefings Bioinform. 10(1): 35-52 (2009) - [j9]Michael C. Ryan, Mark Diekhans
LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures. Bioinform. 25(11): 1431-1432 (2009) - [j8]Ursula Pieper
MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 37(Database-Issue): 347-354 (2009) - 2008
- [j7]Sol Katzman, Christian Barrett, Grant Thiltgen, Rachel Karchin
PREDICT-2ND: a tool for generalized protein local structure prediction. Bioinform. 24(21): 2453-2459 (2008) - 2007
- [j6]Rachel Karchin
Functional Impact of Missense Variants in BRCA1 Predicted by Supervised Learning. PLoS Comput. Biol. 3(2) (2007) - [c2]Libusha Kelly, Rachel Karchin, Andrej Sali:
Protein Interactions and Disease Phenotypes in the ABC Transporter Superfamily. Pacific Symposium on Biocomputing 2007: 51-63 - 2006
- [j5]Ursula Pieper
MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 34(Database-Issue): 291-295 (2006) - 2005
- [j4]Rachel Karchin
LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. Bioinform. 21(12): 2814-2820 (2005) - [j3]Kevin Karplus, Rachel Karchin
Calibrating E-values for hidden Markov models using reverse-sequence null models. Bioinform. 21(22): 4107-4115 (2005) - [c1]Rachel Karchin, Libusha Kelly, Andrej Sali:
Improving Functional Annotation of Non-Synonomous SNPs with Information Theory. Pacific Symposium on Biocomputing 2005 - 2002
- [j2]Rachel Karchin
Classifying G-protein coupled receptors with support vector machines. Bioinform. 18(1): 147-159 (2002)
1990 – 1999
- 1998
- [j1]Rachel Karchin
Weighting hidden Markov models for maximum discrimination. Bioinform. 14(9): 772-782 (1998)
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-05-19 00:12 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by: