Integrated evolution of ribosomal RNAs, introns, and intron nurseries (Q90712342)

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scientific article published on 21 December 2018

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English	Integrated evolution of ribosomal RNAs, introns, and intron nurseries	scientific article published on 21 December 2018

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30578455

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30578455%20AND%20SRC:MED&resulttype=core&format=json

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15 April 2020

title

Integrated evolution of ribosomal RNAs, introns, and intron nurseries (English)

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30578455

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15 April 2020

author name string

Scott O Rogers

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30578455

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publication date

21 December 2018

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30578455

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15 April 2020

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Genetica

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30578455

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15 April 2020

volume

147

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30578455

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15 April 2020

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2

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30578455

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15 April 2020

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103-119

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30578455

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Creative Commons Attribution 4.0 International

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21 December 2018

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Redundant genes

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The gene coding for small ribosomal subunit RNA in the basidiomycete Ustilago maydis contains a group I intron

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A self-splicing group I intron in the nuclear pre-rRNA of the green alga, Ankistrodesmus stipitatus

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Ribosomal RNA introns in archaea and evidence for RNA conformational changes associated with splicing

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Self-splicing of group I introns

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Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

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Speculations on the early course of evolution

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Comparative and functional anatomy of group II catalytic introns—a review

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Conserved sequences and structures of group I introns: building an active site for RNA catalysis--a review

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12 December 2020

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Prokaryotic introns and inteins: a panoply of form and function

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12 December 2020

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Positions of multiple insertions in SSU rDNA of lichen-forming fungi

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The human dystrophin gene requires 16 hours to be transcribed and is cotranscriptionally spliced

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GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain

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An intron in the nuclear ribosomal DNA of Didymium iridis codes for a group I ribozyme and a novel ribozyme that cooperate in self-splicing

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Discovery of group I introns in the nuclear small subunit ribosomal RNA genes of Acanthamoeba

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Messenger RNA intron in the nuclear 18s ribosomal RNA gene of deuteromycetes

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Primary and secondary structure analyses of the rDNA group-I introns of the Zygnematales (Charophyta).

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Group-I intron family in the nuclear ribosomal RNA small subunit genes of Cenococcum geophilum isolates

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A small insertion in the SSU rDNA of the lichen fungus Arthonia lapidicola is a degenerate group-I intron

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PubMed

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Another bridge between kingdoms: tRNA splicing in archaea and eukaryotes

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12 December 2020

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Origin of Genes

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An evolutionarily conserved U5 snRNP-specific protein is a GTP-binding factor closely related to the ribosomal translocase EF-2

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Archaeal introns: splicing, intercellular mobility and evolution.

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12 December 2020

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The evolution of the Calvin cycle from prokaryotic to eukaryotic chromosomes: a case study of functional redundancy in ancient pathways through endosymbiosis.

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Occurrence of introns in the 16S rRNA genes of members of the genus Thermoproteus

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12 December 2020

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Gene Transfer from Organelles to the Nucleus: How Much, What Happens, and Why?

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based on heuristic

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Molecular phylogenetic analysis of archaeal intron-containing genes coding for rRNA obtained from a deep-subsurface geothermal water pool

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Diverse Population of Introns in the Nuclear Ribosomal Genes of Ericoid Mycorrhizal Fungi Includes Elements with Sequence Similarity to Endonuclease-Coding Genes

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12 December 2020

based on heuristic

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Barriers to intron promiscuity in bacteria

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Widespread occurrence of spliceosomal introns in the rDNA genes of ascomycetes

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unusual evolutionary history of the tRNA splicing endonuclease EndA: relationship to the LAGLIDADG and PD-(D/E)XK deoxyribonucleases

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https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary dynamics of multiple group I introns in nuclear ribosomal RNA genes of endoparasitic fungi of the genus Cordyceps

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12 December 2020

based on heuristic

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A structural and phylogenetic analysis of the group IC1 introns in the order Bangiales (Rhodophyta).

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Footprints of primordial introns on the eukaryotic genome.

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12 December 2020

based on heuristic

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Group I intron lateral transfer between red and brown algal ribosomal RNA.

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12 December 2020

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RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distribution of rRNA introns in the three-dimensional structure of the ribosome.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The signal of ancient introns is obscured by intron density and homolog number

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The exon context and distribution of Euascomycetes rRNA spliceosomal introns

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https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

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Mfold web server for nucleic acid folding and hybridization prediction

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variability and phylogenetic incongruence of an SSU nrDNA group I intron in Artomyces, Auriscalpium, and Lentinellus (Auriscalpiaceae: Homobasidiomycetes).

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Long-term evolution of the S788 fungal nuclear small subunit rRNA group I introns

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Life history implications of rRNA gene copy number in Escherichia coli

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of a group I intron splicing intermediate

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of a phage Twort group I ribozyme-product complex

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The natural history of group I introns

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of a self-splicing group II intron catalytic effector domain 5: parallels with spliceosomal U6 RNA

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The PINc domain protein Utp24, a putative nuclease, is required for the early cleavage steps in 18S rRNA maturation

1 reference

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Patterns of group I intron presence in nuclear SSU rDNA of the Lichen family Parmeliaceae.

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https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Heritability and Variability in Ribosomal RNA Genes of Vicia faba.

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https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

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On the origin of the genetic code: signatures of its primordial complementarity in tRNAs and aminoacyl-tRNA synthetases

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Group II introns in eubacteria and archaea: ORF-less introns and new varieties

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12 December 2020

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Splicing and evolution of an unusually small group I intron

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12 December 2020

based on heuristic

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Ribosome's mode of function: myths, facts and recent results

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assembly of ribosomes and spliceosomes: complex ribonucleoprotein machines

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A hierarchical model for evolution of 23S ribosomal RNA.

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution: revisiting the root of the eukaryote tree

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ancient machinery embedded in the contemporary ribosome

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reference URL

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Large-scale tRNA intron transposition in the archaeal order Thermoproteales represents a novel mechanism of intron gain

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origin and evolution of the ribosome

1 reference

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https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On origin of genetic code and tRNA before translation

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https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of introns in the archaeal world

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Learning to live together: mutualism between self-splicing introns and their hosts

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12 December 2020

based on heuristic

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Dinoflagellates: a remarkable evolutionary experiment

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of small putative group I introns in the SSU rRNA gene locus of Phialophora species

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unscrambling genetic information at the RNA level

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retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple self-splicing introns in the 16S rRNA genes of giant sulfur bacteria

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosomal history reveals origins of modern protein synthesis

1 reference

stated in

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origin and evolution of spliceosomal introns

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https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New insights into prebiotic chemistry from Stanley Miller's spark discharge experiments

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protoribosome by quantum kernel energy method

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural phylogenomics retrodicts the origin of the genetic code and uncovers the evolutionary impact of protein flexibility

1 reference

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosomal RNA genes in plants: variability in copy number and in the intergenic spacer

1 reference

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reference URL

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retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variation in the ribosomal RNA genes among individuals of Vicia faba

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retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bacterial group I introns: mobile RNA catalysts

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12 December 2020

based on heuristic

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tRNA gene diversity in the three domains of life

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of the ribosome at atomic resolution

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Secondary structure analyses of the nuclear rRNA internal transcribed spacers and assessment of its phylogenetic utility across the Brassicaceae (mustards).

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ribosome as a missing link in the evolution of life

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retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Disrupted tRNA Genes and tRNA Fragments: A Perspective on tRNA Gene Evolution.

1 reference

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

History of the ribosome and the origin of translation

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Computing the origin and evolution of the ribosome from its structure - Uncovering processes of macromolecular accretion benefiting synthetic biology

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new view of the tree of life

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Secondary structure of nrDNA Internal Transcribed Spacers as a useful tool to align highly divergent species in phylogenetic studies.

1 reference

stated in

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30578455

retrieved

12 December 2020

based on heuristic

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Group I introns are widespread in archaea

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reference URL

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retrieved

12 December 2020

based on heuristic

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Identifiers

DOI

10.1007/S10709-018-0050-Y

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stated in

Europe PubMed Central

PubMed publication ID

30578455

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30578455%20AND%20SRC:MED&resulttype=core&format=json

retrieved

15 April 2020

PubMed publication ID

30578455

1 reference

stated in

Europe PubMed Central

PubMed publication ID

30578455

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30578455%20AND%20SRC:MED&resulttype=core&format=json

retrieved

15 April 2020

 

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