Genome-Wide microRNA Profiling Using Oligonucleotide Microarray Reveals Regulatory Networks of microRNAs in Nicotiana benthamiana During Beet Necrotic Yellow Vein Virus Infection (Q90363225)

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scientific article published on 12 March 2020

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English	Genome-Wide microRNA Profiling Using Oligonucleotide Microarray Reveals Regulatory Networks of microRNAs in Nicotiana benthamiana During Beet Necrotic Yellow Vein Virus Infection	scientific article published on 12 March 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32178444%20AND%20SRC:MED&resulttype=core&format=json

13 April 2020

Genome-Wide microRNA Profiling Using Oligonucleotide Microarray Reveals Regulatory Networks of microRNAs in Nicotiana benthamiana During Beet Necrotic Yellow Vein Virus Infection (English)

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13 April 2020

Nicotiana benthamiana

object named as

Nicotiana benthamiana

1 reference

based on heuristic

inferred from title

microRNA profiling

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based on heuristic

inferred from title

Beet necrotic yellow vein virus

object named as

Beet Necrotic Yellow Vein Virus

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

3

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13 April 2020

4

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13 April 2020

7

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13 April 2020

Yongliang Zhang

8

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13 April 2020

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Junying Liu

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13 April 2020

Huiyan Fan

2

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13 April 2020

Xianbing Wang

5

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13 April 2020

Jialin Yu

6

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13 April 2020

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12 March 2020

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13 April 2020

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13 April 2020

12

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13 April 2020

3

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13 April 2020

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Creative Commons Attribution 4.0 International

12 March 2020

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Real-time quantification of microRNAs by stem-loop RT-PCR

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Double-stranded RNA binding may be a general plant RNA viral strategy to suppress RNA silencing

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Non-natural cinnamic acid derivatives as substrates of cinnamate 4-hydroxylase.

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RNA4-encoded p31 of beet necrotic yellow vein virus is involved in efficient vector transmission, symptom severity and silencing suppression in roots.

1 reference

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Infection and coaccumulation of tobacco mosaic virus proteins alter microRNA levels, correlating with symptom and plant development

1 reference

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miRBase: tools for microRNA genomics

1 reference

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Specific enrichment of miRNAs in Arabidopsis thaliana infected with Tobacco mosaic virus.

1 reference

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Tobacco mosaic virus replicase-auxin/indole acetic acid protein interactions: reprogramming the auxin response pathway to enhance virus infection

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Ethylene signaling: new levels of complexity and regulation

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Control of jasmonate biosynthesis and senescence by miR319 targets

1 reference

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Identification of differentially expressed root genes upon rhizomania disease.

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Progress towards the understanding and control of sugar beet rhizomania disease.

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Plant phase transitions make a SPLash.

1 reference

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based on heuristic

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Small RNAs and developmental timing in plants

1 reference

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MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana

1 reference

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Plant virus-mediated induction of miR168 is associated with repression of ARGONAUTE1 accumulation.

1 reference

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based on heuristic

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Tobacco microRNAs prediction and their expression infected with Cucumber mosaic virus and Potato virus X

1 reference

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The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana.

1 reference

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Evolution and functional diversification of MIRNA genes

1 reference

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based on heuristic

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A common set of developmental miRNAs are upregulated in Nicotiana benthamiana by diverse begomoviruses.

1 reference

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Misregulation of AUXIN RESPONSE FACTOR 8 underlies the developmental abnormalities caused by three distinct viral silencing suppressors in Arabidopsis

1 reference

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psRNATarget: a plant small RNA target analysis server

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Detection and characterization of spontaneous internal deletion mutants of Beet Necrotic yellow vein virus RNA3 from systemic host Nicotiana benthamiana

1 reference

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Transcriptional regulation of Arabidopsis MIR168a and argonaute1 homeostasis in abscisic acid and abiotic stress responses

1 reference

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based on heuristic

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PVX-potyvirus synergistic infections differentially alter microRNA accumulation in Nicotiana benthamiana

1 reference

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based on heuristic

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The Arabidopsis microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection.

1 reference

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based on heuristic

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Selection on synonymous sites for increased accessibility around miRNA binding sites in plants.

1 reference

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A draft genome sequence of Nicotiana benthamiana to enhance molecular plant-microbe biology research

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Deep sequencing and microarray hybridization identify conserved and species-specific microRNAs during somatic embryogenesis in hybrid yellow poplar

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Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing

1 reference

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Heat stress induction of miR398 triggers a regulatory loop that is critical for thermotolerance in Arabidopsis.

1 reference

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Evolutionary conservation of microRNA regulatory programs in plant flower development

1 reference

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Biogenesis, turnover, and mode of action of plant microRNAs

1 reference

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Ethylene-insensitive3 is a senescence-associated gene that accelerates age-dependent leaf senescence by directly repressing miR164 transcription in Arabidopsis

1 reference

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Titanium dioxide nanoparticles affect the growth and microRNA expression of tobacco (Nicotiana tabacum).

1 reference

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based on heuristic

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Evolutionary history of plant microRNAs

1 reference

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

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inferred from PubMed ID database lookup

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1 reference

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based on heuristic

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A diverse set of miRNAs responsive to begomovirus-associated betasatellite in Nicotiana benthamiana

1 reference

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based on heuristic

inferred from PubMed ID database lookup

Genome-wide analysis of water-stress-responsive microRNA expression profile in tobacco roots.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs.

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MicroRNA-based biotechnology for plant improvement

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

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based on heuristic

inferred from PubMed ID database lookup

Infection of Beet necrotic yellow vein virus with RNA4-encoded P31 specifically up-regulates pathogenesis-related protein 10 in Nicotiana benthamiana

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

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based on heuristic

inferred from PubMed ID database lookup

Carica papaya microRNAs are responsive to Papaya meleira virus infection

1 reference

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-Wide Characterization of miRNAs Involved in N Gene-Mediated Immunity in Response to Tobacco Mosaic Virus in Nicotiana benthamiana

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

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based on heuristic

inferred from PubMed ID database lookup

Homeologs of the Nicotiana benthamiana Antiviral ARGONAUTE1 Show Different Susceptibilities to microRNA168-Mediated Control.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptome Analysis of Beta macrocarpa and Identification of Differentially Expressed Transcripts in Response to Beet Necrotic Yellow Vein Virus Infection.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Integrative Analysis of the microRNAome and Transcriptome Illuminates the Response of Susceptible Rice Plants to Rice Stripe Virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

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based on heuristic

inferred from PubMed ID database lookup

A Review of Auxin Response Factors (ARFs) in Plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic tree-informed microRNAome analysis uncovers conserved and lineage-specific miRNAs in Camellia during floral organ development

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

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based on heuristic

inferred from PubMed ID database lookup

Suppression of Jasmonic Acid-Mediated Defense by Viral-Inducible MicroRNA319 Facilitates Virus Infection in Rice

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinct Effects of p19 RNA Silencing Suppressor on Small RNA Mediated Pathways in Plants.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analyses of RNA-Seq and sRNA-Seq data reveal a complex network of anti-viral defense in TCV-infected Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improved Pathogenicity of a Beet Black Scorch Virus Variant by Low Temperature and Co-infection with Its Satellite RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An Ethylene-Induced Regulatory Module Delays Flower Senescence by Regulating Cytokinin Content.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Differential expression of miRNAs and associated gene targets in grapevine leafroll-associated virus 3-infected plants.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of microRNAs of Beta macrocarpa and their responses to Beet necrotic yellow vein virus infection.

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative Transcriptome Analysis Provides Molecular Insights into the Interaction of Beet necrotic yellow vein virus and Beet soil-borne mosaic virus with Their Host Sugar Beet

1 reference

https://pubmed.ncbi.nlm.nih.gov/32178444

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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