Developmental changes in the accessible chromatin, transcriptome and Ascl1-binding correlate with the loss in Müller Glial regenerative potential (Q98394771)

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scientific article published on 12 August 2020

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English	Developmental changes in the accessible chromatin, transcriptome and Ascl1-binding correlate with the loss in Müller Glial regenerative potential	scientific article published on 12 August 2020

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14 August 2020

Developmental changes in the accessible chromatin, transcriptome and Ascl1-binding correlate with the loss in Müller Glial regenerative potential (English)

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14 August 2020

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Leah S VandenBosch

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14 August 2020

Stefanie G Wohl

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14 August 2020

Matthew S Wilken

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14 August 2020

Marcus Hooper

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14 August 2020

Connor Finkbeiner

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14 August 2020

Kristen Cox

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14 August 2020

Laura Chipman

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14 August 2020

Thomas A Reh

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14 August 2020

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12 August 2020

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14 August 2020

Scientific Reports

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14 August 2020

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14 August 2020

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14 August 2020

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14 August 2020

describes a project that uses

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dplyr

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

object named as

edgeR

EdgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

0 references

object named as

ggplot2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Cellular signaling and factors involved in Müller cell gliosis: neuroprotective and detrimental effects

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Müller glial cell reprogramming and retina regeneration

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

The zebrafish as a model for complex tissue regeneration

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Epigenetics in neuronal regeneration

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Ascl1a regulates Müller glia dedifferentiation and retinal regeneration through a Lin-28-dependent, let-7 microRNA signalling pathway

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

The proneural basic helix-loop-helix gene ascl1a is required for retina regeneration

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Regulation of retinal cell fate specification by multiple transcription factors

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Transgenic expression of the proneural transcription factor Ascl1 in Müller glia stimulates retinal regeneration in young mice.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Stimulation of functional neuronal regeneration from Müller glia in adult mice.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Sox2(+) adult stem and progenitor cells are important for tissue regeneration and survival of mice

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Cell differentiation in the retina of the mouse

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Genomic analysis of mouse retinal development

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

BEDOPS: high-performance genomic feature operations

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Genome-wide analysis of Müller glial differentiation reveals a requirement for Notch signaling in postmitotic cells to maintain the glial fate

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

A transient wave of BMP signaling in the retina is necessary for Müller glial differentiation

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

The microRNA expression profile of mouse Müller glia in vivo and in vitro

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Ascl1 expression defines a subpopulation of lineage-restricted progenitors in the mammalian retina.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Lhx2 is required for patterning and expansion of a distinct progenitor cell population committed to eye development

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Multiple intrinsic factors act in concert with Lhx2 to direct retinal gliogenesis

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Lhx2 balances progenitor maintenance with neurogenic output and promotes competence state progression in the developing retina.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Abnormal development of forebrain midline glia and commissural projections in Nfia knock-out mice.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

The BAF complex interacts with Pax6 in adult neural progenitors to establish a neurogenic cross-regulatory transcriptional network.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Epigenomic enhancer annotation reveals a key role for NFIX in neural stem cell quiescence

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

ASCL1 reprograms mouse Muller glia into neurogenic retinal progenitors

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Intrinsic DNA binding properties demonstrated for lineage-specifying basic helix-loop-helix transcription factors.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Cell Type-Specific Epigenomic Analysis Reveals a Uniquely Closed Chromatin Architecture in Mouse Rod Photoreceptors.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Analysis of Transcriptional Regulatory Pathways of Photoreceptor Genes by Expression Profiling of the Otx2-Deficient Retina

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Development and neurogenic potential of Müller glial cells in the vertebrate retina

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

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NFIX Regulates Proliferation and Migration Within the Murine SVZ Neurogenic Niche

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

The transcription factor NFIA controls the onset of gliogenesis in the developing spinal cord.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Epigenomic profiling of retinal progenitors reveals LHX2 is required for developmental regulation of open chromatin

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

The E2F1-3 transcription factors are essential for cellular proliferation.

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

A revised picture of the E2F transcriptional network and RB function

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Fast gapped-read alignment with Bowtie 2

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

The Sequence Alignment/Map format and SAMtools

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Integrative genomics viewer

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

GREAT improves functional interpretation of cis-regulatory regions

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

Using GOstats to test gene lists for GO term association

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

based on heuristic

inferred from DOI database lookup

deepTools2: a next generation web server for deep-sequencing data analysis

1 reference

https://api.crossref.org/works/10.1038%2FS41598-020-70334-1

7 January 2021

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inferred from DOI database lookup

Sch 36605, structure of a novel nucleoside

1 reference

12 April 2024

https://opencitations.net/index/api/v1/citations/10.7164/ANTIBIOTICS.41.123

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10.1038/S41598-020-70334-1

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32788677%20AND%20SRC:MED&resulttype=core&format=json

14 August 2020

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32788677%20AND%20SRC:MED&resulttype=core&format=json

14 August 2020

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