Comparative analysis of protein synthesis rate in COVID-19 with other human coronaviruses (Q96768896)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32592845%20AND%20SRC:MED&resulttype=core&format=json

1 July 2020

title

Comparative analysis of protein synthesis rate in COVID-19 with other human coronaviruses (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32592845%20AND%20SRC:MED&resulttype=core&format=json

1 July 2020

1 reference

Chandra Mohan Dasari

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32592845%20AND%20SRC:MED&resulttype=core&format=json

1 July 2020

Raju Bhukya

series ordinal

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1 July 2020

publication date

24 June 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32592845%20AND%20SRC:MED&resulttype=core&format=json

Infection, Genetics and Evolution

1 July 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32592845%20AND%20SRC:MED&resulttype=core&format=json

1 July 2020

page(s)

104432

1 reference

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Composition of human-specific slow codons and slow di-codons in SARS-CoV and 2019-nCoV are lower than other coronaviruses suggesting a faster protein synthesis rate of SARS-CoV and 2019-nCoV

1 July 2020

cites work

1 reference

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From SARS and MERS CoVs to SARS‐CoV‐2: Moving toward more biased codon usage in viral structural and nonstructural genes

10 February 2021

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10 February 2021

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Analysis of preferred codon usage in the coronavirus N genes and their implications for genome evolution and vaccine design

10 February 2021

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On the origin of degeneracy in the genetic code

10 February 2021

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MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

10 February 2021

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Codon optimality, bias and usage in translation and mRNA decay

10 February 2021

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Case for the genetic code as a triplet of triplets

10 February 2021

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Synonymous Codons: Choose Wisely for Expression

10 February 2021

1 reference

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Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe

10 February 2021

1 reference

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The DEAD-Box Protein Dhh1p Couples mRNA Decay and Translation by Monitoring Codon Optimality

10 February 2021

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10 February 2021

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Structure, Function, and Evolution of Coronavirus Spike Proteins

10 February 2021

1 reference

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PROTEIN TRANSLATION. Seeing translation.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast

10 February 2021

1 reference

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Synthesis at the Speed of Codons.

10 February 2021

1 reference

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Codon optimality is a major determinant of mRNA stability

10 February 2021

1 reference

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Receptor recognition mechanisms of coronaviruses: a decade of structural studies

10 February 2021

1 reference

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Effects of human anti-spike protein receptor binding domain antibodies on severe acute respiratory syndrome coronavirus neutralization escape and fitness

10 February 2021

1 reference

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The coronavirus nucleocapsid is a multifunctional protein.

10 February 2021

1 reference

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The effects of codon context on in vivo translation speed

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells

10 February 2021

1 reference

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Speeding with control: codon usage, tRNAs, and ribosomes

10 February 2021

1 reference

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An improved implementation of effective number of codons (nc).

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

The coronavirus E protein: assembly and beyond

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

Level of gene expression is a major determinant of protein evolution in the viral order Mononegavirales

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

Wobble base-pairing slows in vivo translation elongation in metazoans

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

ViPR: an open bioinformatics database and analysis resource for virology research.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

The role of tRNA and ribosome competition in coupling the expression of different mRNAs in Saccharomyces cerevisiae

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

A structural analysis of M protein in coronavirus assembly and morphology

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

Synonymous but not the same: the causes and consequences of codon bias

10 February 2021

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Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza Virus

10 February 2021

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Understanding Human Coronavirus HCoV-NL63~!2009-11-13~!2010-04-09~!2010-05-25~!

10 February 2021

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Forces that influence the evolution of codon bias

10 February 2021

1 reference

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GtRNAdb: a database of transfer RNA genes detected in genomic sequence

10 February 2021

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Transition-transversion bias is not universal: a counter example from grasshopper pseudogenes

10 February 2021

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History and recent advances in coronavirus discovery

10 February 2021

1 reference

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Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

The extent of codon usage bias in human RNA viruses and its evolutionary origin

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

Inhibition of Vesivirus infections in mammalian tissue culture with antisense morpholino oligomers.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

Analysis of cellular receptors for human coronavirus OC43.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

Cultivation of viruses from a high proportion of patients with colds

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

The 'effective number of codons' used in a gene

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate.

10 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7314694

10.1016/J.MEEGID.2020.104432

10 February 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32592845%20AND%20SRC:MED&resulttype=core&format=json

1 July 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32592845%20AND%20SRC:MED&resulttype=core&format=json

1 July 2020

PubMed publication ID

32592845

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:32592845%20AND%20SRC:MED&resulttype=core&format=json