Strong positive selection drives rapid diversification of R-genes in Arabidopsis relatives (Q82379286)

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scientific article published on 01 January 2010

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English	Strong positive selection drives rapid diversification of R-genes in Arabidopsis relatives	scientific article published on 01 January 2010

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scholarly article

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Europe PubMed Central

PubMed publication ID

20044783

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

retrieved

16 January 2020

title

Strong positive selection drives rapid diversification of R-genes in Arabidopsis relatives (English)

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stated in

Europe PubMed Central

PubMed publication ID

20044783

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

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16 January 2020

author

Zhaoxue Han

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2

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Europe PubMed Central

PubMed publication ID

20044783

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

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16 January 2020

author name string

Qihan Chen

series ordinal

1

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Europe PubMed Central

PubMed publication ID

20044783

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

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16 January 2020

Haiyang Jiang

series ordinal

3

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Europe PubMed Central

PubMed publication ID

20044783

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

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16 January 2020

Dacheng Tian

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4

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Europe PubMed Central

PubMed publication ID

20044783

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

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16 January 2020

Sihai Yang

series ordinal

5

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stated in

Europe PubMed Central

PubMed publication ID

20044783

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

retrieved

16 January 2020

publication date

1 January 2010

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Europe PubMed Central

PubMed publication ID

20044783

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

retrieved

16 January 2020

published in

Journal of Molecular Evolution

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Europe PubMed Central

PubMed publication ID

20044783

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

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16 January 2020

volume

70

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Europe PubMed Central

PubMed publication ID

20044783

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

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16 January 2020

issue

2

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Europe PubMed Central

PubMed publication ID

20044783

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

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16 January 2020

page(s)

137-148

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Europe PubMed Central

PubMed publication ID

20044783

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

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16 January 2020

cites work

Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

based on heuristic

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Pronounced intraspecific haplotype divergence at the RPP5 complex disease resistance locus of Arabidopsis

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

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Gene duplication: the genomic trade in spare parts

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PubMed

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12 December 2020

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Genome-wide investigation on the genetic variations of rice disease resistance genes

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12 December 2020

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Resistance to Ralstonia solanacearum in Arabidopsis thaliana is conferred by the recessive RRS1-R gene, a member of a novel family of resistance genes

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https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

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Host-parasite coevolutionary conflict between Arabidopsis and downy mildew.

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12 December 2020

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Multiple genetic processes result in heterogeneous rates of evolution within the major cluster disease resistance genes in lettuce

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12 December 2020

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Evolutionary dynamics of plant R-genes

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PubMed

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12 December 2020

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Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes

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12 December 2020

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Plant pathogens and integrated defence responses to infection

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12 December 2020

based on heuristic

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Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

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Recent duplications dominate NBS-encoding gene expansion in two woody species

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unique pattern of R-gene variation within populations in Arabidopsis

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Independent deletions of a pathogen-resistance gene in Brassica and Arabidopsis

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DnaSP, DNA polymorphism analyses by the coalescent and other methods

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HyPhy: hypothesis testing using phylogenies

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

based on heuristic

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The maintenance of extreme amino acid diversity at the disease resistance gene, RPP13, in Arabidopsis thaliana

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

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Identification of regions in alleles of the flax rust resistance gene L that determine differences in gene-for-gene specificity

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A genome-wide survey of R gene polymorphisms in Arabidopsis

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The value of prior knowledge in discovering motifs with MEME

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Insertion DNA Promotes Ectopic Recombination during Meiosis in Arabidopsis

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A molecular isolation mechanism associated with high intra-specific diversity in rice

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

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inferred from PubMed ID database lookup

Molecular diversity at the plant-pathogen interface.

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/20044783

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The analysis of population survey data on DNA sequence variation

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unique evolutionary mechanism in R-genes under the presence/absence polymorphism in Arabidopsis thaliana

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Signature of balancing selection in Arabidopsis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Predicting coiled coils from protein sequences

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20044783

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1007/S00239-009-9316-4

1 reference

stated in

Europe PubMed Central

PubMed publication ID

20044783

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

retrieved

16 January 2020

Dimensions Publication ID

1023315317

0 references

PubMed publication ID

20044783

1 reference

stated in

Europe PubMed Central

PubMed publication ID

20044783

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20044783%20AND%20SRC:MED&resulttype=core&format=json

retrieved

16 January 2020

 

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