High incidence of ubiquitin-like domains in human ubiquitin-specific proteases (Q80539443)

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scientific article published on 01 October 2007

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English	High incidence of ubiquitin-like domains in human ubiquitin-specific proteases	scientific article published on 01 October 2007

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PubMed publication ID

17597129

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17597129%20AND%20SRC:MED&resulttype=core&format=json

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1 January 2020

title

High incidence of ubiquitin-like domains in human ubiquitin-specific proteases (English)

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Europe PubMed Central

PubMed publication ID

17597129

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17597129%20AND%20SRC:MED&resulttype=core&format=json

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1 January 2020

author name string

Xiao Zhu

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1

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Europe PubMed Central

PubMed publication ID

17597129

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1 January 2020

Robert Ménard

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2

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PubMed publication ID

17597129

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1 January 2020

Traian Sulea

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3

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PubMed publication ID

17597129

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1 January 2020

publication date

1 October 2007

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PubMed publication ID

17597129

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17597129%20AND%20SRC:MED&resulttype=core&format=json

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1 January 2020

published in

Proteins

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Europe PubMed Central

PubMed publication ID

17597129

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17597129%20AND%20SRC:MED&resulttype=core&format=json

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1 January 2020

volume

69

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Europe PubMed Central

PubMed publication ID

17597129

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17597129%20AND%20SRC:MED&resulttype=core&format=json

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1 January 2020

issue

1

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Europe PubMed Central

PubMed publication ID

17597129

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17597129%20AND%20SRC:MED&resulttype=core&format=json

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1 January 2020

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1-7

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PubMed publication ID

17597129

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1 January 2020

cites work

Structural basis of ubiquitin recognition by the deubiquitinating protease USP2

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

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Protein secondary structure prediction based on position-specific scoring matrices

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

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Chemistry-based functional proteomics reveals novel members of the deubiquitinating enzyme family

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

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Multiple sequence alignment with the Clustal series of programs

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

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Structure of a complex between Nedd8 and the Ulp/Senp protease family member Den1

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

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Mechanism and function of deubiquitinating enzymes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Yersinia virulence factor YopJ acts as a deubiquitinase to inhibit NF-kappa B activation

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

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Servers for protein structure prediction.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

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Regulation of monoubiquitinated PCNA by DUB autocleavage

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The papain-like protease of severe acute respiratory syndrome coronavirus has deubiquitinating activity

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

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Chlamydia trachomatis-derived deubiquitinating enzymes in mammalian cells during infection

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural studies of the interaction between ubiquitin family proteins and proteasome subunit S5a

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solution structure of the human ubiquitin-specific protease 15 DUSP domain

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple associated proteins regulate proteasome structure and function

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection of reliable and unexpected protein fold predictions using 3D-Jury

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ubiquitin and ubiquitin-like proteins as multifunctional signals

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative modeling for protein structure prediction

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Deubiquitination, a new function of the severe acute respiratory syndrome coronavirus papain-like protease?

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

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inferred from PubMed ID database lookup

3D-Jury: a simple approach to improve protein structure predictions

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

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Review: protein secondary structure prediction continues to rise.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

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Structural aspects of recently discovered viral deubiquitinating activities

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

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inferred from PubMed ID database lookup

E3 ubiquitin ligases as regulators of membrane protein trafficking and degradation

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Meta-DP: domain prediction meta-server.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

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A novel active site-directed probe specific for deubiquitylating enzymes reveals proteasome association of USP14

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Severe acute respiratory syndrome coronavirus papain-like protease: structure of a viral deubiquitinating enzyme

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and mechanisms of the proteasome-associated deubiquitinating enzyme USP14

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A RING finger ubiquitin ligase is protected from autocatalyzed ubiquitination and degradation by binding to ubiquitin-specific protease USP7

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Combining local-structure, fold-recognition, and new fold methods for protein structure prediction.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Ubp6 family of deubiquitinating enzymes contains a ubiquitin-like domain: SUb.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA-repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5a

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein structure prediction for the male-specific region of the human Y chromosome.

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A genomic and functional inventory of deubiquitinating enzymes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

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The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural complexity in ubiquitin recognition.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The finger domain of the human deubiquitinating enzyme HAUSP is a zinc ribbon.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ubiquitin-binding domains

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

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Deubiquitinating enzyme Ubp6 functions noncatalytically to delay proteasomal degradation.

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

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Ubiquitin: structures, functions, mechanisms

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

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The zinc finger of the CSN-associated deubiquitinating enzyme USP15 is essential to rescue the E3 ligase Rbx1

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

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Binding site-based classification of coronaviral papain-like proteases

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ubiquilin interacts with ubiquitylated proteins and proteasome through its ubiquitin-associated and ubiquitin-like domains

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ubiquitin domain superfold: structure-based sequence alignments and characterization of binding epitopes

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

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MAFFT version 5: improvement in accuracy of multiple sequence alignment

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ubiquitin system

1 reference

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reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The papain-like protease from the severe acute respiratory syndrome coronavirus is a deubiquitinating enzyme

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17597129

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ubiquitylation and cell signaling

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

based on heuristic

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Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases

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https://pubmed.ncbi.nlm.nih.gov/17597129

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12 December 2020

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Identifiers

DOI

10.1002/PROT.21546

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17597129

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17597129%20AND%20SRC:MED&resulttype=core&format=json

retrieved

1 January 2020

PubMed publication ID

17597129

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17597129

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17597129%20AND%20SRC:MED&resulttype=core&format=json

retrieved

1 January 2020

 

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