Likelihood-ratio tests for positive selection of human and mouse duplicate genes reveal nonconservative and anomalous properties of widely used methods (Q80228272)

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scientific article published on 03 August 2006

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English	Likelihood-ratio tests for positive selection of human and mouse duplicate genes reveal nonconservative and anomalous properties of widely used methods	scientific article published on 03 August 2006

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16959502%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

Likelihood-ratio tests for positive selection of human and mouse duplicate genes reveal nonconservative and anomalous properties of widely used methods (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16959502%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

Austin L. Hughes

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Austin L Hughes

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29 December 2019

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Robert Friedman

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29 December 2019

publication date

3 August 2006

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29 December 2019

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6

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Molecular Phylogenetics and Evolution

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29 December 2019

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29 December 2019

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29 December 2019

388-393

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29 December 2019

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Structure of the human class I histocompatibility antigen, HLA-A2

1 reference

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7 January 2021

The foreign antigen binding site and T cell recognition regions of class I histocompatibility antigens

1 reference

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7 January 2021

Enhanced immunological surveillance in mice heterozygous at the H-2 gene complex

1 reference

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7 January 2021

Evolution of synonymous codon usage in metazoans

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Large-scale search for genes on which positive selection may operate

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Accelerated evolution in the reactive centre regions of serine protease inhibitors

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

The evolution of functionally novel proteins after gene duplication.

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Differential loss of ancestral gene families as a source of genomic divergence in animals

1 reference

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7 January 2021

Variation in the pattern of synonymous and nonsynonymous difference between two fungal genomes

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Tests for positive selection on immune and reproductive genes in closely related species of the murine genus mus

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Preponderance of synonymous changes as evidence for the neutral theory of molecular evolution

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

On Some Principles Governing Molecular Evolution

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

The evolutionary fate and consequences of duplicate genes

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Adaptive protein evolution in Drosophila

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

False-positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Bayes empirical bayes inference of amino acid sites under positive selection

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Frequent false detection of positive selection by the likelihood method with branch-site models

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.015

7 January 2021

Identifiers

10.1016/J.YMPEV.2006.07.015

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16959502%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16959502%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

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