Analysis of genes associated with retrotransposons in the rice genome (Q80164086)

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scientific article published on 09 December 2007

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English	Analysis of genes associated with retrotransposons in the rice genome	scientific article published on 09 December 2007

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PubMed publication ID

18066688

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18066688%20AND%20SRC:MED&resulttype=core&format=json

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29 December 2019

title

Analysis of genes associated with retrotransposons in the rice genome (English)

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Europe PubMed Central

PubMed publication ID

18066688

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29 December 2019

author

Nicholas Krom

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1

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PubMed publication ID

18066688

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29 December 2019

Wusirika Ramakrishna

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3

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PubMed publication ID

18066688

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29 December 2019

author name string

Jill Recla

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2

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PubMed publication ID

18066688

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29 December 2019

publication date

9 December 2007

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PubMed publication ID

18066688

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29 December 2019

published in

Genetica

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Europe PubMed Central

PubMed publication ID

18066688

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18066688%20AND%20SRC:MED&resulttype=core&format=json

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29 December 2019

volume

134

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PubMed publication ID

18066688

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29 December 2019

issue

3

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PubMed publication ID

18066688

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29 December 2019

page(s)

297-310

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PubMed publication ID

18066688

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29 December 2019

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Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat

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Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes

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Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

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High rate of chimeric gene origination by retroposition in plant genomes

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Pack-MULE transposable elements mediate gene evolution in plants

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The Dual Function of Sugar Carriers: Transport and Sugar Sensing

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Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA

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Repbase update: a database and an electronic journal of repetitive elements

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The Evolution of Transcription-Initiation Sites

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A unified classification system for eukaryotic transposable elements

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12 December 2020

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Retrotransposon-induced mutations in grape skin color

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Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs).

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Integration and nonrandom mutation of a plasma membrane proton ATPase gene fragment within the Bs1 retroelement of maize

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12 December 2020

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Transposable element contributions to plant gene and genome evolution

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Transposable elements, gene creation and genome rearrangement in flowering plants

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LIPID-TRANSFER PROTEINS IN PLANTS.

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The cell wall-associated kinase (WAK) and WAK-like kinase gene family.

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Transposable element insertions respecify alternative exon splicing in three Drosophila myosin heavy chain mutants.

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Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

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Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse

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Retrotransposons of the Tnt1B family are mobile in Nicotiana plumbaginifolia and can induce alternative splicing of the host gene upon insertion.

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12 December 2020

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Retrotransposon-gene associations are widespread among D. melanogaster populations.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

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Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

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The map-based sequence of the rice genome

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Large retrotransposon derivatives: abundant, conserved but nonautonomous retroelements of barley and related genomes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

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The contribution of LTR retrotransposon sequences to gene evolution in Mus musculus

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PubMed

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12 December 2020

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Evolutionary tinkering with transposable elements

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mobile elements and the human genome

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A genome-wide transcriptional activity survey of rice transposable element-related genes

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Retrotransposon insertion into the maize waxy gene results in tissue-specific RNA processing

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

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Cell-type specific expression of three rice genes GOS2, GOS5 and GOS9

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

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Effect of low molecular size humic substances on nitrate uptake and expression of genes involved in nitrate transport in maize (Zea mays L.).

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternative splicing induced by insertion of retrotransposons into the maize waxy gene

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18066688

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolution of mobile DNAs: when will transposons create phylogenies that look as if there is a master gene?

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The brown midrib3 (bm3) mutation in maize occurs in the gene encoding caffeic acid O-methyltransferase

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

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Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

LTR retrotransposon-gene associations in Drosophila melanogaster.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18066688

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Minimal conditions for exonization of intronic sequences: 5' splice site formation in alu exons

1 reference

stated in

PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The institute for genomic research Osa1 rice genome annotation database

1 reference

stated in

PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Strong selective sweep associated with a transposon insertion in Drosophila simulans.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

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Evidence for the contribution of LTR retrotransposons to C. elegans gene evolution

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

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Origin of a substantial fraction of human regulatory sequences from transposable elements

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mobile elements: drivers of genome evolution

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

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An expression atlas of rice mRNAs and small RNAs

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

based on heuristic

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A novel hybrid open reading frame formed by multiple cellular gene transductions by a plant long terminal repeat retroelement

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Birth of a chimeric primate gene by capture of the transposase gene from a mobile element

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Impact of transposable elements on the evolution of mammalian gene regulation

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

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Transposable elements are found in a large number of human protein-coding genes

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https://pubmed.ncbi.nlm.nih.gov/18066688

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12 December 2020

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The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes

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12 December 2020

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Identifiers

DOI

10.1007/S10709-007-9237-3

1 reference

stated in

Europe PubMed Central

PubMed publication ID

18066688

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18066688%20AND%20SRC:MED&resulttype=core&format=json

retrieved

29 December 2019

Dimensions Publication ID

1027124414

0 references

PubMed publication ID

18066688

1 reference

stated in

Europe PubMed Central

PubMed publication ID

18066688

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18066688%20AND%20SRC:MED&resulttype=core&format=json

retrieved

29 December 2019

 

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