Phylogeny and evolution of papillomaviruses based on the E1 and E2 proteins (Q80155400)

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scientific article published on 22 August 2006

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English	Phylogeny and evolution of papillomaviruses based on the E1 and E2 proteins	scientific article published on 22 August 2006

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PubMed publication ID

16927128

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16927128%20AND%20SRC:MED&resulttype=core&format=json

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29 December 2019

title

Phylogeny and evolution of papillomaviruses based on the E1 and E2 proteins (English)

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PubMed publication ID

16927128

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29 December 2019

author name string

Ignacio G Bravo

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1

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PubMed publication ID

16927128

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29 December 2019

Angel Alonso

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2

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PubMed publication ID

16927128

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29 December 2019

publication date

22 August 2006

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PubMed publication ID

16927128

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29 December 2019

published in

Virus Genes

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PubMed publication ID

16927128

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29 December 2019

volume

34

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Europe PubMed Central

PubMed publication ID

16927128

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29 December 2019

issue

3

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PubMed publication ID

16927128

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29 December 2019

page(s)

249-262

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PubMed publication ID

16927128

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29 December 2019

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Cytochrome b phylogeny and the taxonomy of great apes and mammals

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Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

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Induction of the human papillomavirus type 31 late promoter requires differentiation but not DNA amplification

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Detection of human papillomavirus DNA in pterygia from different geographical regions

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A broad range of human papillomavirus types detected with a general PCR method suitable for analysis of cutaneous tumours and normal skin

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T-Coffee: A novel method for fast and accurate multiple sequence alignment

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Characterization of a novel close-to-root papillomavirus from a Florida manatee by using multiply primed rolling-circle amplification: Trichechus manatus latirostris papillomavirus type 1.

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The evolution of small DNA viruses of eukaryotes: past and present considerations

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Elucidating the population histories and transmission dynamics of papillomaviruses using phylogenetic trees

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The clinical importance of the nomenclature, evolution and taxonomy of human papillomaviruses

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A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene

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PubMed

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12 December 2020

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Cloning and genomic characterization of Felis domesticus papillomavirus type 1.

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12 December 2020

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Cutaneous warts in butchers

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Understanding enzyme superfamilies. Chemistry As the fundamental determinant in the evolution of new catalytic activities

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A sequence-independent strategy for detection and cloning of circular DNA virus genomes by using multiply primed rolling-circle amplification

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Patterns of nucleotide difference in overlapping and non-overlapping reading frames of papillomavirus genomes

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Imbroglios of viral taxonomy: genetic exchange and failings of phenetic approaches

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Phylogenomics and the reconstruction of the tree of life

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Diversifying selection in human papillomavirus type 16 lineages based on complete genome analyses

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Molecular methods for virus discovery.

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Codon usage bias and A+T content variation in human papillomavirus genomes

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Papillomaviruses: different genes have different histories.

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12 December 2020

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The use of general primers GP5 and GP6 elongated at their 3' ends with adjacent highly conserved sequences improves human papillomavirus detection by PCR

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The carcinogenicity of human papillomavirus types reflects viral evolution.

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Point mutations in SP1 motifs in the upstream regulatory region of human papillomavirus type 18 isolates from cervical cancers increase promoter activity

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Variant upstream regulatory region sequences differentially regulate human papillomavirus type 16 DNA replication throughout the viral life cycle

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Avian papillomaviruses: the parrot Psittacus erithacus papillomavirus (PePV) genome has a unique organization of the early protein region and is phylogenetically related to the chaffinch papillomavirus

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Warts in fish handlers

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Epidemiologic classification of human papillomavirus types associated with cervical cancer

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Phylogenetic classification of human papillomaviruses: correlation with clinical manifestations

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Classification of papillomaviruses

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Group-specific differentiation between high- and low-risk human papillomavirus genotypes by general primer-mediated PCR and two cocktails of oligonucleotide probes.

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based on heuristic

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No magic pill for phylogenetic error

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https://pubmed.ncbi.nlm.nih.gov/16927128

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based on heuristic

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Quality assessment of multiple alignment programs.

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Equine papillomavirus type 1: complete nucleotide sequence and characterization of recombinant virus-like particles composed of the EcPV-1 L1 major capsid protein.

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DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment

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Phylogenetic incongruence among oncogenic genital alpha human papillomaviruses

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Differences in transformation activity between HPV-18 and HPV-16 map to the viral LCR-E6-E7 region

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Papillomaviruses and cancer: from basic studies to clinical application

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The papillomavirus life cycle

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Novel short-fragment PCR assay for highly sensitive broad-spectrum detection of anogenital human papillomaviruses

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Pathogenesis of human papillomaviruses in differentiating epithelia

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The effect of paralogous lineages on the application of reconciliation analysis by cophylogeny mapping

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based on heuristic

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Isolation and cloning of a papillomavirus from a North American porcupine by using multiply primed rolling-circle amplification: the Erethizon dorsatum papillomavirus type 1.

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Chapter 8: Human papillomavirus and skin cancer.

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Evolutionary Basis of Codon Usage and Nucleotide Composition Bias in Vertebrate DNA Viruses

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Human papillomavirus type 13 and pygmy chimpanzee papillomavirus type 1: comparison of the genome organizations

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12 December 2020

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Mucosal human papillomaviruses encode four different E5 proteins whose chemistry and phylogeny correlate with malignant or benign growth

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Isolation and cloning of the raccoon (Procyon lotor) papillomavirus type 1 by using degenerate papillomavirus-specific primers

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Human papillomavirus types in invasive cervical cancer worldwide: a meta-analysis

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based on heuristic

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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Different papillomaviruses have different repertoires of transcription factor binding sites: convergence and divergence in the upstream regulatory region

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Healthy skin of many animal species harbors papillomaviruses which are closely related to their human counterparts

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Origins of highly mosaic mycobacteriophage genomes

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Identifiers

DOI

10.1007/S11262-006-0017-4

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Europe PubMed Central

PubMed publication ID

16927128

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16927128%20AND%20SRC:MED&resulttype=core&format=json

retrieved

29 December 2019

Dimensions Publication ID

1046305514

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PubMed publication ID

16927128

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16927128

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16927128%20AND%20SRC:MED&resulttype=core&format=json

retrieved

29 December 2019

 

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