Computational Protein Design Using Flexible Backbone Remodeling and Resurfacing: Case Studies in Structure-Based Antigen Design (Q85244150)

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16 February 2020

title

Computational protein design using flexible backbone remodeling and resurfacing: case studies in structure-based antigen design (English)

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16 February 2020

Computational Protein Design Using Flexible Backbone Remodeling and Resurfacing: Case Studies in Structure-Based Antigen Design (English)

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Crossref

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

8 August 2024

William R Schief

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16 February 2020

Yih-En Andrew Ban

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16 February 2020

Katharine Ellingson

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16 February 2020

Hengyu Xu

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16 February 2020

Erica Boni

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16 February 2020

Tyler Bradley-Hewitt

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16 February 2020

Leonidas Stamatatos

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16 February 2020

Bruno E. Correia

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8 August 2024

Della J. Friend

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8 August 2024

Jessica F. Bruhn-Johannsen

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8 August 2024

Roland K. Strong

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8 August 2024

language of work or name

English

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National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20969873

8 August 2024

publication date

20 October 2010

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full work available at URL

16 February 2020

number of pages

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based on heuristic

inferred from page(s)

https://api.elsevier.com/content/article/PII:S002228361001079X?httpAccept=text/xml

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Crossref

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https://api.elsevier.com/content/article/PII:S002228361001079X?httpAccept=text/plain

8 August 2024

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Journal of Molecular Biology

8 August 2024

published in

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volume

405

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issue

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page(s)

284-297

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De Novo Protein Design: Fully Automated Sequence Selection

16 February 2020

cites work

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Design, structure and stability of a hyperthermophilic protein variant

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Computational thermostabilization of an enzyme

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Supercharging proteins can impart unusual resilience

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Construction of new ligand binding sites in proteins of known structure. II. Grafting of a buried transition metal binding site into Escherichia coli thioredoxin

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Computational design of receptor and sensor proteins with novel functions

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

De novo computational design of retro-aldol enzymes

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Kemp elimination catalysts by computational enzyme design

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Modulating calmodulin binding specificity through computational protein design

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Automated design of specificity in molecular recognition

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Computational redesign of protein-protein interaction specificity

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Computational design of calmodulin mutants with up to 900-fold increase in binding specificity

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Design of protein-interaction specificity gives selective bZIP-binding peptides.

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Computational redesign of endonuclease DNA binding and cleavage specificity

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Computational design of antibody-affinity improvement beyond in vivo maturation

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Structure-based design of a T-cell receptor leads to nearly 100-fold improvement in binding affinity for pepMHC.

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Computational design of epitope-scaffolds allows induction of antibodies specific for a poorly immunogenic HIV vaccine epitope

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Elicitation of structure-specific antibodies by epitope scaffolds

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Computer-aided design of functional protein interactions

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Coupling backbone flexibility and amino acid sequence selection in protein design

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

High-resolution protein design with backbone freedom

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

High-resolution design of a protein loop

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Alteration of enzyme specificity by computational loop remodeling and design

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Crystal structure of Thermotoga maritima ribosome recycling factor: a tRNA mimic

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Protein-protein docking with backbone flexibility

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Cyclic coordinate descent: A robotics algorithm for protein loop closure.

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Protein structure prediction using Rosetta

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Macromolecular modeling with rosetta

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

An improved protein decoy set for testing energy functions for protein structure prediction.

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Structure and binding mode of a ribosome recycling factor (RRF) from mesophilic bacterium

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

X-ray crystallography study on ribosome recycling: the mechanism of binding and action of RRF on the 50S ribosomal subunit

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

High-resolution structure prediction and the crystallographic phase problem

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

Native protein sequences are close to optimal for their structures

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

RosettaHoles: rapid assessment of protein core packing for structure prediction, refinement, design, and validation

8 August 2024

1 reference

https://api.crossref.org/works/10.1016/J.JMB.2010.09.061

8 August 2024

Identifiers

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16 February 2020

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