WRKY gene family evolution in Arabidopsis thaliana (Q84629863)

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scientific article published on 31 July 2011

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English	WRKY gene family evolution in Arabidopsis thaliana	scientific article published on 31 July 2011

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scholarly article

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Europe PubMed Central

PubMed publication ID

21805321

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 February 2020

title

WRKY gene family evolution in Arabidopsis thaliana (English)

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Europe PubMed Central

PubMed publication ID

21805321

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

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9 February 2020

main subject

Arabidopsis thaliana

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author name string

Qishan Wang

series ordinal

1

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Europe PubMed Central

PubMed publication ID

21805321

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

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9 February 2020

Minghui Wang

series ordinal

2

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Europe PubMed Central

PubMed publication ID

21805321

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 February 2020

Xiangzhe Zhang

series ordinal

3

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Europe PubMed Central

PubMed publication ID

21805321

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

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9 February 2020

Boji Hao

series ordinal

4

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Europe PubMed Central

PubMed publication ID

21805321

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

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9 February 2020

S K Kaushik

series ordinal

5

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Europe PubMed Central

PubMed publication ID

21805321

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

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9 February 2020

Yuchun Pan

series ordinal

6

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Europe PubMed Central

PubMed publication ID

21805321

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 February 2020

publication date

31 July 2011

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Europe PubMed Central

PubMed publication ID

21805321

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 February 2020

published in

Genetica

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Europe PubMed Central

PubMed publication ID

21805321

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 February 2020

volume

139

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Europe PubMed Central

PubMed publication ID

21805321

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

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9 February 2020

issue

8

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Europe PubMed Central

PubMed publication ID

21805321

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 February 2020

page(s)

973-983

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Europe PubMed Central

PubMed publication ID

21805321

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 February 2020

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Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/21805321

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Prediction of protein B-factor profiles.

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A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences.

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12 December 2020

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Secondary structural complementarity between DNA and proteins

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PubMed

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12 December 2020

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Statistical methods for testing functional divergence after gene duplication

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12 December 2020

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Members of a new family of DNA-binding proteins bind to a conserved cis-element in the promoters of alpha-Amy2 genes

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Characterization of a cDNA encoding a novel DNA-binding protein, SPF1, that recognizes SP8 sequences in the 5' upstream regions of genes coding for sporamin and beta-amylase from sweet potato.

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12 December 2020

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Gene conversion: mechanisms, evolution and human disease

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Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

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FoxO gene family evolution in vertebrates

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12 December 2020

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MAP kinase signalling cascade in Arabidopsis innate immunity.

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12 December 2020

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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

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12 December 2020

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Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

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PubMed

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12 December 2020

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Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/21805321

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12 December 2020

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MrBayes 3: Bayesian phylogenetic inference under mixed models

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12 December 2020

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SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins.

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12 December 2020

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Isolation and characterization of two pathogen- and salicylic acid-induced genes encoding WRKY DNA-binding proteins from tobacco

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/21805321

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PAML 4: phylogenetic analysis by maximum likelihood

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Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

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PubMed

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12 December 2020

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DNA binding mechanism revealed by high resolution crystal structure of Arabidopsis thaliana WRKY1 protein

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/21805321

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12 December 2020

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inferred from PubMed ID database lookup

Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense response

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/21805321

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12 December 2020

based on heuristic

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WebLogo: A Sequence Logo Generator

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/21805321

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12 December 2020

based on heuristic

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The WRKY superfamily of plant transcription factors.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of conserved residues of the WRKY domain in the DNA-binding of tobacco WRKY family proteins

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/21805321

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/21805321

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prediction of functional specificity determinants from protein sequences using log-likelihood ratios

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MODELTEST: testing the model of DNA substitution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Statistical tests for detecting gene conversion.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional divergence in protein (family) sequence evolution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Likelihood and Bayes estimation of ancestral population sizes in hominoids using data from multiple loci

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene conversion as a possible factor influencing genetic polymorphism

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluation of methods for detecting recombination from DNA sequences: empirical data

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The WRKY family of transcription factors in rice and Arabidopsis and their origins

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accuracy and power of bayes prediction of amino acid sites under positive selection

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A potato gene encoding a WRKY-like transcription factor is induced in interactions with Erwinia carotovora subsp. atroseptica and Phytophthora infestans and is coregulated with class I endochitinase expression

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Amino acid residues that determine functional specificity of NADP- and NAD-dependent isocitrate and isopropylmalate dehydrogenases.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/21805321

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1007/S10709-011-9599-4

1 reference

stated in

Europe PubMed Central

PubMed publication ID

21805321

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 February 2020

Dimensions Publication ID

1000647396

0 references

PubMed publication ID

21805321

1 reference

stated in

Europe PubMed Central

PubMed publication ID

21805321

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21805321%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 February 2020

 

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