A highly flexible and repeatable genotyping method for aquaculture studies based on target amplicon sequencing using next-generation sequencing technology (Q64066417)

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scientific article published on 06 May 2019

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English	A highly flexible and repeatable genotyping method for aquaculture studies based on target amplicon sequencing using next-generation sequencing technology	scientific article published on 06 May 2019

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scholarly article

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24 April 2020

A highly flexible and repeatable genotyping method for aquaculture studies based on target amplicon sequencing using next-generation sequencing technology (English)

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24 April 2020

amplicon sequencing

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24 April 2020

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24 April 2020

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Mana Sato

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Sota Yoshikawa

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Yuki Kobayashi

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Takuya Itou

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24 April 2020

Kiyoshi Kikuchi

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6 May 2019

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24 April 2020

Scientific Reports

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24 April 2020

1

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24 April 2020

6904

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24 April 2020

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Creative Commons Attribution 4.0 International

6 May 2019

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April 2022 Public Data File from Crossref

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describes a project that uses

massive parallel sequencing

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based on heuristic

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Genome-wide genetic marker discovery and genotyping using next-generation sequencing

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Harnessing the power of RADseq for ecological and evolutionary genomics

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From promise to practice: pairing non-invasive sampling with genomics in conservation

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Targeted capture in evolutionary and ecological genomics.

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Rapid SNP discovery and genetic mapping using sequenced RAD markers

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Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species

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7 January 2021

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RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

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7 January 2021

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The effect of RAD allele dropout on the estimation of genetic variation within and between populations.

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7 January 2021

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Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq).

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Applications of genotyping by sequencing in aquaculture breeding and genetics

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7 January 2021

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Assessment of genetic diversity in Coho salmon (Oncorhynchus kisutch) populations with no family records using ddRAD-seq

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7 January 2021

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Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

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7 January 2021

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Multiplex PCR Targeted Amplicon Sequencing (MTA-Seq): Simple, Flexible, and Versatile SNP Genotyping by Highly Multiplexed PCR Amplicon Sequencing.

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Editorial 2018.

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Production of Tiger Puffer Takifugu rubripes Offspring from Triploid Grass Puffer Takifugu niphobles Parents

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Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome

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7 January 2021

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Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

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7 January 2021

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A genetic linkage map for the tiger pufferfish, Takifugu rubripes

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7 January 2021

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Integration of the genetic map and genome assembly of fugu facilitates insights into distinct features of genome evolution in teleosts and mammals

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A trans-species missense SNP in Amhr2 is associated with sex determination in the tiger pufferfish, Takifugu rubripes (fugu).

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7 January 2021

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The genetic architecture of growth rate in juvenile Takifugu species

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7 January 2021

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Genomic regions of pufferfishes responsible for host specificity of a monogenean parasite, Heterobothrium okamotoi

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Genetic Basis Underlying Behavioral Correlation Between Fugu Takifugu rubripes and a Closely Related Species, Takifugu niphobles

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7 January 2021

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Identification of the sex-determining locus in grass puffer (Takifugu niphobles) provides evidence for sex-chromosome turnover in a subset of Takifugu species.

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Piercing the dark matter: bioinformatics of long-range sequencing and mapping.

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The Third Revolution in Sequencing Technology

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Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array

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7 January 2021

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Genome-wide association and genomic selection in animal breeding

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Population structure in admixed populations: effect of admixture dynamics on the pattern of linkage disequilibrium.

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7 January 2021

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Genomic selection.

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7 January 2021

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Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing.

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7 January 2021

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7 January 2021

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7 January 2021

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The Sequence Alignment/Map format and SAMtools

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7 January 2021

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7 January 2021

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The variant call format and VCFtools

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7 January 2021

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Illumina sequencing library preparation for highly multiplexed target capture and sequencing

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7 January 2021

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LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms

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Fast model-based estimation of ancestry in unrelated individuals

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PLINK: a tool set for whole-genome association and population-based linkage analyses

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7 January 2021

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qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots

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12 December 2020

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From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline

1 reference

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1 reference

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Genomics in aquaculture to better understand species biology and accelerate genetic progress.

1 reference

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1 reference

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10.1038/S41598-019-43336-X

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24 April 2020

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24 April 2020

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24 April 2020

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