Enhancing the one health initiative by using whole genome sequencing to monitor antimicrobial resistance of animal pathogens: Vet-LIRN collaborative project with veterinary diagnostic laboratories in United States and Canada (Q64065179)

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English	Enhancing the one health initiative by using whole genome sequencing to monitor antimicrobial resistance of animal pathogens: Vet-LIRN collaborative project with veterinary diagnostic laboratories in United States and Canada	article

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24 April 2020

Enhancing the one health initiative by using whole genome sequencing to monitor antimicrobial resistance of animal pathogens: Vet-LIRN collaborative project with veterinary diagnostic laboratories in United States and Canada (English)

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24 April 2020

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whole genome sequencing

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24 April 2020

Laura Brunengraber Goodman

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24 April 2020

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Gregory H Tyson

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Patrick K Mitchell

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24 April 2020

Yan Zhang

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24 April 2020

Melanie Prarat

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Jing Cui

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Laura Peak

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Linto Antony

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Milton Thomas

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Sarah M Nemser

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Renee Anderson

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Anil J Thachil

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Rebecca J Franklin-Guild

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Durda Slavic

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Yugendar R Bommineni

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Shipra Mohan

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Susan Sanchez

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Rebecca Wilkes

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G Kenitra Hendrix

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Brian Lubbers

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Deborah Reed

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Tracie Jenkins

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Alma Roy

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Daniel Paulsen

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Rinosh Mani

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Karen Olsen

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Lanny Pace

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Martha Pulido

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Megan Jacob

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Brett T Webb

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Sarmila Dasgupta

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Amar Patil

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Akhilesh Ramachandran

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Deepanker Tewari

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Nagaraja Thirumalapura

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Donna J Kelly

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Shelley C Rankin

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Sara D Lawhon

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Jing Wu

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Claire R Burbick

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Renate Reimschuessel

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Orhan Sahin

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BMC Veterinary Research

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4-Quinolone resistance mutations in the DNA gyrase of Escherichia coli clinical isolates identified by using the polymerase chain reaction

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Salmonella typhimurium gyrA mutations associated with fluoroquinolone resistance

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Transmission of multiple antimicrobial-resistant Staphylococcus intermedius between dogs affected by deep pyoderma and their owners

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12 December 2020

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Screening for skin carriage of methicillin-resistant coagulase-positive staphylococci and Staphylococcus schleiferi in dogs with healthy and inflamed skin

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12 December 2020

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Evaluation of susceptibility test breakpoints used to predict mecA-mediated resistance in Staphylococcus pseudintermedius isolated from dogs

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https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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BLAST+: architecture and applications

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Clonal spread of methicillin-resistant Staphylococcus pseudintermedius in Europe and North America: an international multicentre study

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12 December 2020

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Genetic relatedness of methicillin-resistant Staphylococcus pseudintermedius (MRSP) isolated from a dog and the dog owner

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12 December 2020

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Unusual genotype of a Uropathogenic Escherichia coli strain assigned to the B2 phylogenetic group.

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12 December 2020

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Evaluation of pet contact as a risk factor for carriage of multidrug-resistant staphylococci in nursing home residents

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https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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Review on methicillin-resistant Staphylococcus pseudintermedius

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https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

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12 December 2020

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Antimicrobial resistance of Staphylococcus pseudintermedius

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https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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Pet animals and foreign travel are risk factors for colonisation with extended-spectrum β-lactamase-producing Escherichia coli.

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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Multilocus sequence typing for characterization of Staphylococcus pseudintermedius

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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QUAST: quality assessment tool for genome assemblies

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes

1 reference

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12 December 2020

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Kraken: ultrafast metagenomic sequence classification using exact alignments

1 reference

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Prokka: rapid prokaryotic genome annotation

1 reference

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Trimmomatic: a flexible trimmer for Illumina sequence data

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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Reducing the risk of pet-associated zoonotic infections

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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WGS accurately predicts antimicrobial resistance in Escherichia coli

1 reference

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12 December 2020

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The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies

1 reference

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12 December 2020

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Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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Whole-Genome Sequencing for Detecting Antimicrobial Resistance in Nontyphoidal Salmonella

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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Comparative Analysis of Extended-Spectrum-β-Lactamase CTX-M-65-Producing Salmonella enterica Serovar Infantis Isolates from Humans, Food Animals, and Retail Chickens in the United States

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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A survey of methods used for antimicrobial susceptibility testing in veterinary diagnostic laboratories in the United States

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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Epidemiology of Salmonella enterica Serotype Dublin Infections among Humans, United States, 1968-2013.

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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Antimicrobial resistance: a One Health perspective

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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Antimicrobial Resistance among Staphylococci of Animal Origin

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

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Whole-Genome Sequence Analysis of CTX-M Containing Escherichia coli Isolates from Retail Meats and Cattle in the United States

1 reference

https://pubmed.ncbi.nlm.nih.gov/31060608

12 December 2020

based on heuristic

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Using machine learning to predict antimicrobial minimum inhibitory concentrations and associated genomic features for nontyphoidal

1 reference

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12 December 2020

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10.1186/S12917-019-1864-2

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24 April 2020

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24 April 2020

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