Comparative bioinformatic and proteomic approaches to evaluate the outer membrane proteome of the fish pathogen Yersinia ruckeri (Q64054719)

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26 April 2020

title

Comparative bioinformatic and proteomic approaches to evaluate the outer membrane proteome of the fish pathogen Yersinia ruckeri (English)

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26 April 2020

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Yersinia ruckeri

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26 April 2020

Edward Grahame

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26 April 2020

Michael J Ormsby

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26 April 2020

Robert L Davies

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26 April 2020

publication date

1 March 2019

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26 April 2020

published in

Journal of Proteomics

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26 April 2020

volume

199

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26 April 2020

page(s)

135-147

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Membrane receptor dependent iron transport inEscherichia coli

26 April 2020

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O-serotyping of Yersinia ruckeri with special emphasis on European isolates

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Virulence and serum-resistance in different clonal groups and serotypes of Yersinia ruckeri

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Evidence that Yersinia ruckeri possesses a high affinity iron uptake system

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Characterization of a pilus produced by Aeromonas hydrophila

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Application of a novel multi-screening signature-tagged mutagenesis assay for identification of Klebsiella pneumoniae genes essential in colonization and infection

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Recovery of a new biogroup of Yersinia ruckeri from diseased rainbow trout (Oncorhynchus mykiss, Walbaum).

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Bacterial iron homeostasis

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Outer-membrane-protein subtypes of Haemophilus influenzae isolates from North India

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Identification of a 19.3-kDa protein in MRHA-positive Edwardsiella tarda: putative fimbrial major subunit

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Molecular basis of bacterial outer membrane permeability revisited

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12 December 2020

Sequence diversity and molecular evolution of the heat-modifiable outer membrane protein gene (ompA) of Mannheimia(Pasteurella) haemolytica, Mannheimia glucosida, and Pasteurella trehalosi

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12 December 2020

Identification of specific in vivo-induced (ivi) genes in Yersinia ruckeri and analysis of ruckerbactin, a catecholate siderophore iron acquisition system.

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12 December 2020

Discovery of glpC, an organic solvent tolerance-related gene in Escherichia coli, using gene expression profiles from DNA microarrays

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12 December 2020

Identification of a universal Group B streptococcus vaccine by multiple genome screen

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12 December 2020

Proteomic analysis on the expression of outer membrane proteins ofVibrio alginolyticus at different sodium concentrations

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12 December 2020

Structural features, properties and regulation of the outer-membrane protein W (OmpW) of Vibrio cholerae

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12 December 2020

Analysing the outer membrane subproteome of Methylococcus capsulatus (Bath) using proteomics and novel biocomputing tools

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12 December 2020

Immobilization induces alterations in the outer membrane protein pattern of Yersinia ruckeri.

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12 December 2020

Analysis of the Pasteurella multocida outer membrane sub-proteome and its response to the in vivo environment of the natural host

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Gel-based versus gel-free proteomics: a review.

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Identification of the major outer membrane proteins of Aeromonas salmonicida

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Phospholipase A in Gram-negative bacteria and its role in pathogenesis

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12 December 2020

Curli biogenesis and function

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12 December 2020

First description of non-motile Yersinia ruckeri serovar I strains causing disease in rainbow trout, Oncorhynchus mykiss (Walbaum), cultured in Spain.

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12 December 2020

Characterization of Francisella tularensis outer membrane proteins

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12 December 2020

Outer membrane proteome of Actinobacillus pleuropneumoniae: LC-MS/MS analyses validate in silico predictions

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12 December 2020

Yersinia ruckeri infections in salmonid fish

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12 December 2020

Biogenesis of the gram-negative bacterial outer membrane.

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12 December 2020

The ompW (porin) gene mediates methyl viologen (paraquat) efflux in Salmonella enterica serovar typhimurium.

1 reference

12 December 2020

Molecular virulence mechanisms of the fish pathogen Yersinia ruckeri

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12 December 2020

Sequence variation in the outer membrane protein-encoding gene cmeC, conferring multidrug resistance among Campylobacter jejuni and Campylobacter coli strains isolated from different hosts

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12 December 2020

Characterisation of the plasma membrane subproteome of bloodstream form Trypanosoma brucei.

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12 December 2020

Identification of membrane-associated proteins from Campylobacter jejuni strains using complementary proteomics technologies

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12 December 2020

First report of Yersinia ruckeri biotype 2 in the USA.

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12 December 2020

Proteomic analysis of the sarcosine-insoluble outer membrane fraction of Flavobacterium columnare

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12 December 2020

Genome-wide subcellular localization of putative outer membrane and extracellular proteins in Leptospira interrogans serovar Lai genome using bioinformatics approaches

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12 December 2020

Protein expression by Aeromonas hydrophila during growth in vitro and in vivo

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12 December 2020

Bioengineering a humanized acne microenvironment model: proteomics analysis of host responses to Propionibacterium acnes infection in vivo.

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12 December 2020

Membrane proteins and membrane proteomics

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12 December 2020

Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome

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12 December 2020

Power and limitations of electrophoretic separations in proteomics strategies.

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12 December 2020

Evaluation of procedures for outer membrane isolation from Campylobacter jejuni

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12 December 2020

Structural and Functional Studies of Truncated Hemolysin A from Proteus mirabilis

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12 December 2020

Genetic determinants of virulence, antibiogram and altered biotype among the Vibrio cholerae O1 isolates from different cholera outbreaks in India.

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12 December 2020

Identification of broad cross-protective immunogens using heterogeneous antiserum-based immunoproteomic approach.

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12 December 2020

Helicobacter pylori proteomics by 2-DE/MS, 1-DE-LC/MS and functional data mining

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12 December 2020

Proteomic characterization of apilRregulatory mutant ofAzoarcussp. strain BH72 with the aid of gel-based and gel-free approaches

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12 December 2020

Immunoproteomic identification of polyvalent vaccine candidates from Vibrio parahaemolyticus outer membrane proteins

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12 December 2020

Accelerated microevolution in an outer membrane protein (OMP) of the intracellular bacteria Wolbachia

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12 December 2020

Immunoproteomic analyses of outer membrane proteins of Mannheimia haemolytica and identification of potential vaccine candidates

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12 December 2020

Membrane proteome of the green sulfur bacterium Chlorobium tepidum (syn. Chlorobaculum tepidum) analyzed by gel-based and gel-free methods.

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12 December 2020

Comparative susceptibility of Atlantic salmon and rainbow trout to Yersinia ruckeri: relationship to O antigen serotype and resistance to serum killing

1 reference

12 December 2020

Evidence for a common gene pool and frequent recombinational exchange of the tbpBA operon in Mannheimia haemolytica, Mannheimia glucosida and Bibersteinia trehalosi

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12 December 2020

Portrait of a pathogen: the Mycobacterium tuberculosis proteome in vivo

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12 December 2020

Characterisation of proteins extracted from the surface of Salmonella Typhimurium grown under SPI-2-inducing conditions by LC-ESI/MS/MS sequencing.

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12 December 2020

Independent emergence of Yersinia ruckeri biotype 2 in the United States and Europe.

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12 December 2020

Serological and molecular heterogeneity among Yersinia ruckeri strains isolated from farmed Atlantic salmon Salmo salar in Chile

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12 December 2020

Proteomic analysis of outer membrane vesicles derived from Pseudomonas aeruginosa

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12 December 2020

Outer membrane protein A of bovine and ovine isolates of Mannheimia haemolytica is surface exposed and contains host species-specific epitopes

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12 December 2020

A proteome reference map and virulence factors analysis of Yersinia pestis 91001.

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12 December 2020

Identification of plasma-responsive outer membrane proteins and their vaccine potential in Edwardsiella tarda using proteomic approach

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12 December 2020

Multilocus sequence typing reveals high genetic diversity and epidemic population structure for the fish pathogen Yersinia ruckeri

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12 December 2020

Discovery of an archetypal protein transport system in bacterial outer membranes.

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12 December 2020

Eight stranded β -barrel and related outer membrane proteins: role in bacterial pathogenesis

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12 December 2020

Comparative membrane proteome analysis of three Borrelia species

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12 December 2020

Predicting the outer membrane proteome of Pasteurella multocida based on consensus prediction enhanced by results integration and manual confirmation

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12 December 2020

Comparative antigenic proteins and proteomics of pathogenic Yersinia enterocolitica bio-serotypes 1B/O: 8 and 2/O: 9 cultured at 25°C and 37°C.

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12 December 2020

A polyphasic approach to study the intraspecific diversity of Yersinia ruckeri strains isolated from recent outbreaks in salmonid culture

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12 December 2020

Identification of surrogates of protection against yersiniosis in immersion vaccinated Atlantic salmon

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12 December 2020

Isolation of Yersinia ruckeri strain H01 from farm-raised Amur Sturgeon Acipenser schrencki in China

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12 December 2020

Microbe-host interactions: structure and role of Gram-negative bacterial porins

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12 December 2020

Comparison of detergent-based sample preparation workflows for LTQ-Orbitrap analysis of the Escherichia coli proteome

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12 December 2020

Outer membrane protein OmpW of Escherichia coli is required for resistance to phagocytosis

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12 December 2020

Enhanced efficacy of an attenuated Flavobacterium psychrophilum strain cultured under iron-limited conditions

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12 December 2020

Identifying potential therapeutic targets of methicillin-resistant Staphylococcus aureus through in vivo proteomic analysis

1 reference

12 December 2020

Comprehensive proteomic profiling of outer membrane vesicles from Campylobacter jejuni

1 reference

12 December 2020

Molecular characterization and functional analysis of outer membrane vesicles from the antarctic bacterium Pseudomonas syringae suggest a possible response to environmental conditions

1 reference

12 December 2020

Activation of the alternative sigma factor SigB of Staphylococcus aureus following internalization by epithelial cells - an in vivo proteomics perspective

1 reference

12 December 2020

Proteome-wide identification of predominant subcellular protein localizations in a bacterial model organism

1 reference

12 December 2020

The lipopolysaccharide export pathway in Escherichia coli: structure, organization and regulated assembly of the Lpt machinery

1 reference

12 December 2020

Proteomic analysis of Vibrio cholerae outer membrane vesicles.

1 reference

12 December 2020

Identification of Coxiella burnetii surface-exposed and cell envelope associated proteins using a combined bioinformatics plus proteomics strategy.

1 reference

12 December 2020

Yersinia ruckeri Biotypes 1 and 2 in France: presence and antibiotic susceptibility.

1 reference

12 December 2020

Discovery of novel cross-protective Rickettsia prowazekii T-cell antigens using a combined reverse vaccinology and in vivo screening approach

1 reference

12 December 2020

A comprehensive analysis of the Omp85/TpsB protein superfamily structural diversity, taxonomic occurrence, and evolution.

1 reference

12 December 2020

Conserved features and major differences in the outer membrane protein composition of chlamydiae

1 reference

12 December 2020

Whole-Genome Yersinia sp. Assemblies from 10 Diverse Strains

1 reference

12 December 2020

Proteomic analysis of Lawsonia intracellularis reveals expression of outer membrane proteins during infection.

1 reference

12 December 2020

Comparative analysis of the uropathogenic Escherichia coli surface proteome by tandem mass-spectrometry of artificially induced outer membrane vesicles

1 reference

12 December 2020

Complete Genome Sequence of the Fish Pathogen Yersinia ruckeri Strain SC09, Isolated from Diseased Ictalurus punctatus in China

1 reference

12 December 2020

Complete Genome Sequence of Yersinia ruckeri Strain CSF007-82, Etiologic Agent of Red Mouth Disease in Salmonid Fish.

1 reference

12 December 2020

Proteomic profiling of the outer membrane fraction of the obligate intracellular bacterial pathogen Ehrlichia ruminantium

1 reference

12 December 2020

Proteomic analysis of Yersinia enterocolitica biovar 1A under iron-rich and iron-poor conditions indicate existence of efficiently regulated mechanisms of iron homeostasis

1 reference

12 December 2020

Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica

1 reference

12 December 2020

Yersinia ruckeri Isolates Recovered from Diseased Atlantic Salmon (Salmo salar) in Scotland Are More Diverse than Those from Rainbow Trout (Oncorhynchus mykiss) and Represent Distinct Subpopulations

1 reference

12 December 2020

Pseudomonas fluorescens Filamentous Hemagglutinin, an Iron-Regulated Protein, Is an Important Virulence Factor that Modulates Bacterial Pathogenicity

1 reference

12 December 2020

The repeat structure of two paralogous genes, Yersinia ruckeri invasin (yrInv) and a "Y. ruckeri invasin-like molecule", (yrIlm) sheds light on the evolution of adhesive capacities of a fish pathogen

1 reference

12 December 2020

Invasion and replication of Yersinia ruckeri in fish cell cultures.

1 reference

12 December 2020

Multilocus Variable-Number Tandem-Repeat Analysis of Yersinia ruckeri Confirms the Existence of Host Specificity, Geographic Endemism, and Anthropogenic Dissemination of Virulent Clones

1 reference

12 December 2020

Identification of Cross-Protective Potential Antigens against Pathogenic spp. through Combining Pan-Genome Analysis with Reverse Vaccinology

1 reference

12 December 2020

10.1016/J.JPROT.2019.02.014

Identifiers

DOI

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26 April 2020

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26 April 2020

PubMed publication ID

30831250

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