Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria. (Q52422334)

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scientific article published on 23 May 2010

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English	Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria.	scientific article published on 23 May 2010

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scholarly article

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Europe PubMed Central

PubMed publication ID

1 May 2018

http://europepmc.org/abstract/MED/20580935

Comparative network clustering of direct repeats (DRs) and cas genes confirms the possibility of the horizontal transfer of CRISPR locus among bacteria. (English)

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Europe PubMed Central

PubMed publication ID

1 May 2018

http://europepmc.org/abstract/MED/20580935

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network clustering

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based on heuristic

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Ambrosius P. Snijders

2

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Europe PubMed Central

PubMed publication ID

1 May 2018

http://europepmc.org/abstract/MED/20580935

Musaddeque Ahmed

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Musaddeque Ahmed

4

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Sajib Chakraborty

object named as

Sajib Chakraborty

1

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author name string

Rajib Chakravorty

3

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Europe PubMed Central

PubMed publication ID

1 May 2018

http://europepmc.org/abstract/MED/20580935

Ashek Md Tarek

5

1 reference

Europe PubMed Central

PubMed publication ID

1 May 2018

http://europepmc.org/abstract/MED/20580935

M Anwar Hossain

6

1 reference

Europe PubMed Central

PubMed publication ID

1 May 2018

http://europepmc.org/abstract/MED/20580935

publication date

23 May 2010

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Europe PubMed Central

PubMed publication ID

1 May 2018

http://europepmc.org/abstract/MED/20580935

number of pages

10

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Molecular Phylogenetics and Evolution

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Europe PubMed Central

PubMed publication ID

1 May 2018

http://europepmc.org/abstract/MED/20580935

56

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Europe PubMed Central

PubMed publication ID

1 May 2018

http://europepmc.org/abstract/MED/20580935

3

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Europe PubMed Central

PubMed publication ID

1 May 2018

http://europepmc.org/abstract/MED/20580935

878-887

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Europe PubMed Central

PubMed publication ID

1 May 2018

http://europepmc.org/abstract/MED/20580935

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Lateral Gene Transfer and the Origins of Prokaryotic Groups

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Small CRISPR RNAs guide antiviral defense in prokaryotes

1 reference

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Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

1 reference

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Phage response to CRISPR-encoded resistance in Streptococcus thermophilus

1 reference

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7 January 2021

Discordant 16S and 23S rRNA gene phylogenies for the genus Helicobacter: implications for phylogenetic inference and systematics

1 reference

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7 January 2021

BioLayout--an automatic graph layout algorithm for similarity visualization.

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes.

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Horizontal gene transfer, genome innovation and evolution

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Identification of genes that are associated with DNA repeats in prokaryotes

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Transition-transversion bias is not universal: a counter example from grasshopper pseudogenes

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Horizontal gene transfer in prokaryotes: quantification and classification

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences

1 reference

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7 January 2021

CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic properties

1 reference

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7 January 2021

A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

The origin and evolution of Mycobacterium tuberculosis

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Lateral gene transfer and the nature of bacterial innovation

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Synonymous and nonsynonymous substitutions in mammalian genes and the nearly neutral theory

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Detection of lateral gene transfer among microbial genomes.

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism.

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

CRISPR-based adaptive and heritable immunity in prokaryotes

1 reference

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7 January 2021

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2010.05.020

7 January 2021

Identifiers

10.1016/J.YMPEV.2010.05.020

1 reference

Europe PubMed Central

PubMed publication ID

1 May 2018

http://europepmc.org/abstract/MED/20580935

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 May 2018

http://europepmc.org/abstract/MED/20580935

ResearchGate publication ID

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