Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment. (Q52209528)

27 April 2018

title

Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment. (English)

1 reference

27 April 2018

1 reference

Heringa J

1 reference

27 April 2018

publication date

1 June 1999

1 reference

27 April 2018

published in

Computers & Chemistry

1 reference

27 April 2018

volume

1 reference

27 April 2018

issue

3-4

1 reference

27 April 2018

page(s)

341-364

1 reference

27 April 2018

Weights for data related by a tree

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

The Protein Data Bank: a computer-based archival file for macromolecular structures

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Computer comparison of new and existing criteria for constructing evolutionary trees from sequence data

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

A symmetric-iterated multiple alignment of protein sequences.

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

The Multiple Sequence Alignment Problem in Biology

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

A multiple sequence comparison method

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Multiple sequence alignment with hierarchical clustering

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Establishing homologies in protein sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Progressive sequence alignment as a prerequisite to correct phylogenetic trees

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Knowledge-based protein secondary structure assignment

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Seventy-five percent accuracy in protein secondary structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Exhaustive matching of the entire protein sequence database

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Profile analysis: detection of distantly related proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Amino acid substitution matrices from protein blocks

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Embedding strategies for effective use of information from multiple sequence alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

CLUSTAL: a package for performing multiple sequence alignment on a microcomputer

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

The alignment of sets of sequences and the construction of phyletic trees: an integrated method

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

A new approach to protein fold recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Identification and application of the concepts important for accurate and reliable protein secondary structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Quantification of secondary structure prediction improvement using multiple alignments.

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

A tool for multiple sequence alignment

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Secondary structure-based profiles: use of structure-conserving scoring tables in searching protein sequence databases for structural similarities

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Improving the sensitivity of the sequence profile method

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

A simple and fast approach to prediction of protein secondary structure from multiply aligned sequences with accuracy above 70%.

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Simultaneous comparison of three protein sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Structural comparison of cupredoxin domains: domain recycling to construct proteins with novel functions

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

A general method applicable to the search for similarities in the amino acid sequence of two proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

A data bank merging related protein structures and sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Prediction of protein secondary structure at better than 70% accuracy

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Database of homology-derived protein structures and the structural meaning of sequence alignment

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

A workbench for multiple alignment construction and analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Weighting aligned protein or nucleic acid sequences to correct for unequal representation

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Identification of common molecular subsequences

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Protein structure alignment

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

A flexible method to align large numbers of biological sequences.

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Dynamic sequence databank searching with templates and multiple alignment

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Iterated sequence databank search methods.

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Weighting in sequence space: a comparison of methods in terms of generalized sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

An Assessment of Amino Acid Exchange Matrices in Aligning Protein Sequences: The Twilight Zone Revisited

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

Prediction of protein secondary structure and active sites using the alignment of homologous sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0097-8485%2899%2900012-1

7 January 2021

10.1016/S0097-8485(99)00012-1

Identifiers

DOI

1 reference

27 April 2018

DBLP publication ID

journals/candc/Heringa99

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

27 April 2018