A refined hydrogen bond potential for flexible protein models (Q58658646)

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6 February 2020

title

A refined hydrogen bond potential for flexible protein models (English)

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6 February 2020

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6 February 2020

Marta Enciso

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6 February 2020

language of work or name

English

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publication date

1 June 2010

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Journal of Chemical Physics

6 February 2020

published in

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volume

132

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issue

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page(s)

235102

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Dominant forces in protein folding

6 February 2020

cites work

1 reference

Hydrogen bonding in globular proteins

21 January 2018

1 reference

Common core structure of amyloid fibrils by synchrotron X-ray diffraction.

21 January 2018

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Amyloid fibril formation by an SH3 domain

21 January 2018

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Conserved thermodynamic contributions of backbone hydrogen bonds in a protein fold

21 January 2018

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Energetics of protein folding

21 January 2018

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Protein folding and unfolding at atomic resolution

21 January 2018

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How well can simulation predict protein folding kinetics and thermodynamics?

21 January 2018

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Potential functions for hydrogen bonds in protein structure prediction and design.

21 January 2018

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A backbone-based theory of protein folding

21 January 2018

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Folding Trp-cage to NMR resolution native structure using a coarse-grained protein model

21 January 2018

1 reference

Protein folding: lessons learned and new frontiers. Preface

21 January 2018

1 reference

Geometry and symmetry presculpt the free-energy landscape of proteins

21 January 2018

1 reference

Virtual atom representation of hydrogen bonds in minimal off-lattice models of alpha helices: effect on stability, cooperativity and kinetics

21 January 2018

1 reference

Evaluation of coarse grained models for hydrogen bonds in proteins

21 January 2018

1 reference

21 January 2018

1 reference

An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.

21 January 2018

1 reference

21 January 2018

The Protein Data Bank

1 reference

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

Contribution of hydrogen bonding to protein stability estimated from isotope effects

21 January 2018

1 reference

Thermodynamics of Go-type models for protein folding

21 January 2018

1 reference

Optimized molecular dynamics force fields applied to the helix-coil transition of polypeptides

21 January 2018

1 reference

Finite-size scaling of helix–coil transitions in poly-alanine studied by multicanonical simulations

21 January 2018

1 reference

Molecular dynamics simulations of helix denaturation

21 January 2018

1 reference

The helix-coil transition revisited

21 January 2018

1 reference

Poly(L-alanine) as a universal reference material for understanding protein energies and structures

21 January 2018

1 reference

VMD: visual molecular dynamics

21 January 2018

1 reference

On the mechanism of alpha-helix to beta-sheet transition in the recombinant prion protein.

21 January 2018

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Helix versus sheet formation in a small peptide.

21 January 2018

1 reference

The structural basis of protein folding and its links with human disease

21 January 2018

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Dependence of folding dynamics and structural stability on the location of a hydrophobic pair in β-hairpins

21 January 2018

1 reference

Universal model for α-helix and β-sheet structures in protein

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1063/1.3436723

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6 February 2020

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