Complete nitrification: insights into the ecophysiology of comammox Nitrospira (Q58555212)

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scientific article published on 10 November 2018

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English	Complete nitrification: insights into the ecophysiology of comammox Nitrospira	scientific article published on 10 November 2018

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Europe PubMed Central

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6311188

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review article

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title

Complete nitrification: insights into the ecophysiology of comammox Nitrospira (English)

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Europe PubMed Central

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6311188

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30415428%20AND%20SRC:MED&resulttype=core&format=json

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2 May 2020

main subject

nitrogen

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4 July 2020

ecophysiology

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author

Sebastian Lücker

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3

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Europe PubMed Central

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6311188

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2 May 2020

author name string

Hanna Koch

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1

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Europe PubMed Central

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6311188

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2 May 2020

Maartje A H J van Kessel

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2

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Europe PubMed Central

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6311188

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English

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publication date

10 November 2018

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6311188

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2 May 2020

1 January 2019

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PubMed Central

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4 July 2020

published in

Applied Microbiology and Biotechnology

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Europe PubMed Central

PMC publication ID

6311188

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PubMed Central

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4 July 2020

volume

103

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Europe PubMed Central

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6311188

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issue

1

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page(s)

177-189

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2 May 2020

copyright license

Creative Commons Attribution 4.0 International

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4 July 2020

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Functional and physiological evidence for a rhesus-type ammonia transporter in Nitrosomonas europaea

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Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation

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Characterization of two new genes, amoR and amoD, in the amo operon of the marine ammonia oxidizer Nitrosococcus oceani ATCC 19707

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The 1.3-A resolution structure of Nitrosomonas europaea Rh50 and mechanistic implications for NH3 transport by Rhesus family proteins

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Characterization of the Pseudomonas pseudoalcaligenes CECT5344 Cyanase, an enzyme that is not essential for cyanide assimilation.

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Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria.

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The isomeric transformation of urea into ammonium cyanate in aqueous solutions

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Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

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A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

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Predicting microbial nitrogen pathways from basic principles

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The divergent AmoC3 subunit of ammonia monooxygenase functions as part of a stress response system in Nitrosomonas europaea.

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Diversity, physiology, and niche differentiation of ammonia-oxidizing archaea

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Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

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Role for urea in nitrification by polar marine Archaea

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Urease gene-containing Archaea dominate autotrophic ammonia oxidation in two acid soils

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The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer

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Biosynthesis of the urease metallocenter

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Chromatographic determination of nanomolar cyanate concentrations in estuarine and sea waters by precolumn fluorescence derivatization

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Isolation of Nitrospira belonging to sublineage II from a wastewater treatment plant

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

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Interactions between Thaumarchaea, Nitrospira and methanotrophs modulate autotrophic nitrification in volcanic grassland soil

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An obligately aerobic soil bacterium activates fermentative hydrogen production to survive reductive stress during hypoxia

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Functionally relevant diversity of closely related Nitrospira in activated sludge.

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Variability of the transporter gene complement in ammonia-oxidizing archaea.

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Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation

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12 December 2020

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Isolation of sublineage I Nitrospira by a novel cultivation strategy.

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12 December 2020

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Comparison of oxidation kinetics of nitrite-oxidizing bacteria: nitrite availability as a key factor in niche differentiation

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12 December 2020

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Switching substrate specificity of AMT/MEP/ Rh proteins

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improved isolation strategies allowed the phenotypic differentiation of two Nitrospira strains from widespread phylogenetic lineages.

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cyanate as an energy source for nitrifiers

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete nitrification by Nitrospira bacteria

1 reference

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retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete nitrification by a single microorganism

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inhabitancy of active Nitrosopumilus-like ammonia-oxidizing archaea and Nitrospira nitrite-oxidizing bacteria in the sponge Theonella swinhoei

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp.

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria.

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Direct-geneFISH: a simplified protocol for the simultaneous detection and quantification of genes and rRNA in microorganisms.

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of Nitrogen Oxide Metabolism among Diverse Ammonia-Oxidizing Bacteria

1 reference

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https://pubmed.ncbi.nlm.nih.gov/30415428

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nitrosomonas europaea cytochrome P460 is a direct link between nitrification and nitrous oxide emission

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30415428

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ecophysiology and Comparative Genomics of Nitrosomonas mobilis Ms1 Isolated from Autotrophic Nitrifying Granules of Wastewater Treatment Bioreactor

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Horizontal gene transfer drives the evolution of Rh50 permeases in prokaryotes

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Freshwater Recirculating Aquaculture System Operations Drive Biofilter Bacterial Community Shifts around a Stable Nitrifying Consortium of Ammonia-Oxidizing Archaea and Comammox Nitrospira

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nitrite oxidation kinetics of two Nitrospira strains: The quest for competition and ecological niche differentiation.

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30415428

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Integrated metabolism in sponge-microbe symbiosis revealed by genome-centered metatranscriptomics

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comammox in drinking water systems.

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Capturing the genetic makeup of the active microbiome in situ

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nitric oxide is an obligate bacterial nitrification intermediate produced by hydroxylamine oxidoreductase

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30415428

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mixotrophy drives niche expansion of verrucomicrobial methanotrophs.

1 reference

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reference URL

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle.

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-Enabled Insights into the Ecophysiology of the Comammox Bacterium "Candidatus Nitrospira nitrosa"

1 reference

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https://pubmed.ncbi.nlm.nih.gov/30415428

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations

1 reference

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30415428

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Year-round shotgun metagenomes reveal stable microbial communities in agricultural soils and novel ammonia oxidizers responding to fertilization.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30415428

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Adaptability as the key to success for the ubiquitous marine nitrite oxidizer Nitrococcus.

1 reference

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PubMed

reference URL

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comammox Nitrospira are abundant ammonia oxidizers in diverse groundwater-fed rapid sand filter communities.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30415428

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic Analysis of Two Phylogenetically Distinct Nitrospira Species Reveals Their Genomic Plasticity and Functional Diversity

1 reference

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30415428

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30415428

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The microbial nitrogen-cycling network

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https://pubmed.ncbi.nlm.nih.gov/30415428

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete ammonia oxidation: an important control on nitrification in engineered ecosystems?

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30415428

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nitrification in agricultural soils: impact, actors and mitigation

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30415428

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction

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reference URL

https://pubmed.ncbi.nlm.nih.gov/30415428

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30415428

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Go with the flow or solitary confinement: a look inside the single-cell toolbox for isolation of rare and uncultured microbes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30415428

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1007/S00253-018-9486-3

1 reference

stated in

Europe PubMed Central

PMC publication ID

6311188

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30415428%20AND%20SRC:MED&resulttype=core&format=json

retrieved

2 May 2020

PMC publication ID

6311188

1 reference

stated in

Europe PubMed Central

PMC publication ID

6311188

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30415428%20AND%20SRC:MED&resulttype=core&format=json

retrieved

2 May 2020

PubMed publication ID

30415428

1 reference

stated in

Europe PubMed Central

PMC publication ID

6311188

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30415428%20AND%20SRC:MED&resulttype=core&format=json

retrieved

2 May 2020

 

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