Docking of calcium ions in proteins with flexible side chains and deformable backbones (Q57130626)

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English	Docking of calcium ions in proteins with flexible side chains and deformable backbones	No description defined

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instance of

scholarly article

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title

Docking of calcium ions in proteins with flexible side chains and deformable backbones (English)

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author name string

Ricky C K Cheng

series ordinal

1

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Boris S Zhorov

series ordinal

2

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language of work or name

English

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publication date

April 2010

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published in

European Biophysics Journal

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volume

39

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issue

5

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page(s)

825-38

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cites work

Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and Gd3+.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

Predicting calcium-binding sites in proteins - a graph theory and geometry approach.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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Monte Carlo-minimized energy profile of estradiol in the ligand-binding tunnel of 17 beta-hydroxysteroid dehydrogenase: atomic mechanisms of steroid recognition

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

Prediction of water and metal binding sites and their affinities by using the Fold-X force field

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

A united residue force-field for calcium-protein interactions.

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

Crystallographic refinement by incorporation of molecular dynamics: thermostable serine protease thermitase complexed with eglin c

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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The Protein Data Bank

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural analysis, identification, and design of calcium-binding sites in proteins

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chymotrypsin C (caldecrin) promotes degradation of human cationic trypsin: identity with Rinderknecht's enzyme Y

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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Divalent cations modulate the activity of metabotropic glutamate receptors

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural characteristics of protein binding sites for calcium and lanthanide ions

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of the calcium pump of sarcoplasmic reticulum at 2.6 A resolution

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

Characterizing the microenvironment surrounding protein sites

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

Calcium-binding sites in proteins: a structural perspective

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

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Where metal ions bind in proteins

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

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inferred from PubMed ID database lookup

Free-energy linkage between folding and calcium binding in EF-hand proteins

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

Predicting metal-binding site residues in low-resolution structural models.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

Metal-ligand geometry relevant to proteins and in proteins: sodium and potassium

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

Structure of native porcine pancreatic elastase at 1.65 A resolutions

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

Identification and dissection of Ca(2+)-binding sites in the extracellular domain of Ca(2+)-sensing receptor

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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Calcium signaling

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effective energy function for proteins in solution

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

Sodium channels: ionic model of slow inactivation and state-dependent drug binding

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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Structural and energetic parameters of Ca2+ binding to peptides and proteins

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

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inferred from PubMed ID database lookup

Monte Carlo-energy minimization of correolide in the Kv1.3 channel: possible role of potassium ion in ligand-receptor interactions

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

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inferred from PubMed ID database lookup

The enzymatic activity of proteinase K is controlled by calcium.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

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inferred from PubMed ID database lookup

Recognizing protein binding sites using statistical descriptions of their 3D environments

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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Rational design of a calcium-binding protein

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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Are predicted structures good enough to preserve functional sites?

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

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inferred from PubMed ID database lookup

Sugar and signal-transducer binding sites of the Escherichia coli galactose chemoreceptor protein

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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Calmodulin structure refined at 1.7 A resolution

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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Calcium-dependent stability studies of domains 1 and 2 of epithelial cadherin

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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Small revisions to predicted distances around metal sites in proteins

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural elements of ligand recognition site in secretory phospho-lipase A2 and structure-based design of specific inhibitors

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Predicting Ca(2+)-binding sites in proteins

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular modeling of benzothiazepine binding in the L-type calcium channel

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of apo-calmodulin bound to the first two IQ motifs of myosin V reveals essential recognition features

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

Structural model of a synthetic Ca2+ channel with bound Ca2+ ions and dihydropyridine ligand

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synchrotron X-ray data collection and restrained least-squares refinement of the crystal structure of proteinase K at 1.5 A resolution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

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inferred from PubMed ID database lookup

Structural basis for the regulation of muscle contraction by troponin and tropomyosin

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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Conservative D133E mutation of calmodulin site IV drastically alters calcium binding and phosphodiesterase regulation.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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inferred from PubMed ID database lookup

Homology model of dihydropyridine receptor: implications for L-type Ca(2+) channel modulation by agonists and antagonists

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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A single calcium binding site is crucial for the calcium-dependent thermal stability of thermolysin-like proteases

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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Design of a calcium-binding protein with desired structure in a cell adhesion molecule

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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Water and proteins. I. The significance and structure of water; its interaction with electrolytes and non-electrolytes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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Refined structure of baboon alpha-lactalbumin at 1.7 A resolution. Comparison with C-type lysozyme

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/19937325

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12 December 2020

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Monte Carlo-minimization approach to the multiple-minima problem in protein folding

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

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inferred from PubMed ID database lookup

Structural comparison suggests that thermolysin and related neutral proteases undergo hinge-bending motion during catalysis

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/19937325

retrieved

12 December 2020

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Identifiers

DOI

10.1007/S00249-009-0561-7

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PubMed publication ID

19937325

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