De Novo Prediction of Three-dimensional Structures for Major Protein Families (Q56999399)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

title

De novo prediction of three-dimensional structures for major protein families (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

protein structure prediction

12 November 2019

main subject

0 references

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

Richard Bonneau

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

Carol A Rohl

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

Dylan Chivian

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

Phillip Bradley

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

Tim Robertson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

Charlie E M Strauss

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

language of work or name

English

0 references

publication date

1 September 2002

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

Journal of Molecular Biology

12 November 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

volume

322

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

page(s)

65-78

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

12 November 2019

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Enhanced genome annotation using structural profiles in the program 3D-PSSM

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Pfam: multiple sequence alignments and HMM-profiles of protein domains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Pfam: a comprehensive database of protein domain families based on seed alignments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

MODBASE, a database of annotated comparative protein structure models.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Protein folds and functions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Protein fold irregularities that hinder sequence analysis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Evolution of function in protein superfamilies, from a structural perspective.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

From protein structure to function.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Critical assessment of methods of protein structure prediction (CASP): round IV.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Rosetta in CASP4: progress in ab initio protein structure prediction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Assessment of novel fold targets in CASP4: predictions of three-dimensional structures, secondary structures, and interresidue contacts.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Improving the performance of Rosetta using multiple sequence alignment information and global measures of hydrophobic core formation.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Functional inferences from blind ab initio protein structure predictions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Derivation of 3D coordinate templates for searching structural databases: application to Ser-His-Asp catalytic triads in the serine proteinases and lipases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Protein recognition of adenylate: an example of a fuzzy recognition template

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Functional analysis of the Escherichia coli genome using the sequence-to-structure-to-function paradigm: identification of proteins exhibiting the glutaredoxin/thioredoxin disulfide oxidoreductase activity.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Searching the protein structure databank with weak sequence patterns and structural constraints.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Three-dimensional structure analysis of PROSITE patterns

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

The relationship between protein structure and function: a comprehensive survey with application to the yeast genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Protein structure comparison by alignment of distance matrices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Dali: a network tool for protein structure comparison

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

The Protein Data Bank: unifying the archive

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Prospects for ab initio protein structural genomics.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

SCOP: a structural classification of proteins database for the investigation of sequences and structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

CATH--a hierarchic classification of protein domain structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

MaxSub: an automated measure for the assessment of protein structure prediction quality.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Saposin fold revealed by the NMR structure of NK-lysin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Bacteriocin AS-48, a microbial cyclic polypeptide structurally and functionally related to mammalian NK-lysin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

The two types of 3-dehydroquinase have distinct structures but catalyze the same overall reaction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

The NMR side-chain assignments and solution structure of enzyme IIBcellobiose of the phosphoenolpyruvate-dependent phosphotransferase system of Escherichia coli.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Structure of Dihydroorotate Dehydrogenase B

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Crystal structure of archaeal RNase HII: a homologue of human major RNase H

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Crystal structure determination of aristolochene synthase from the blue cheese mold, Penicillium roqueforti

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Structure of S-lectin, a developmentally regulated vertebrate beta-galactoside-binding protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Distributions of beta sheets in proteins with application to structure prediction.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Selection of representative protein data sets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Clustering of low-energy conformations near the native structures of small proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900698-8

Ab initio protein structure prediction of CASP III targets using ROSETTA

7 January 2021

1 reference

9 October 2024

https://opencitations.net/index/api/v1/references/10.1016/S0022-2836(02)00698-8

Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction

1 reference

9 October 2024

https://opencitations.net/index/api/v1/references/10.1016/S0022-2836(02)00698-8

Structure classification-based assessment of CASP3 predictions for the fold recognition targets

1 reference

9 October 2024

https://opencitations.net/index/api/v1/references/10.1016/S0022-2836(02)00698-8

Identifiers

DOI

10.1016/S0022-2836(02)00698-8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12215415%20AND%20SRC:MED&resulttype=core&format=json