PathCORE-T: identifying and visualizing globally co-occurring pathways in large transcriptomic compendia. (Q55467557)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

title

PathCORE-T: identifying and visualizing globally co-occurring pathways in large transcriptomic compendia (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

computational mathematics

5 April 2020

main subject

molecular biology

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

Casey S. Greene

1 reference

12 July 2018

author name string

Kathleen M. Chen

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12 July 2018

Jie Tan

1 reference

12 July 2018

Gregory P. Way

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12 July 2018

Georgia Doing

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12 July 2018

language of work or name

English

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publication date

3 July 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

volume

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

0 references

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

5 April 2020

Jupyter notebook file

1 reference

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6029133/

cites work

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15 July 2018

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Type II-dependent secretion of a Pseudomonas aeruginosa DING protein

15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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High Expression of Sphingosine 1-Phosphate Receptors, S1P1 and S1P3, Sphingosine Kinase 1, and Extracellular Signal-Regulated Kinase-1/2 Is Associated with Development of Tamoxifen Resistance in Estrogen Receptor-Positive Breast Cancer Patients

15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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Integrins and angiogenesis: a sticky business

15 July 2018

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Metagenes and molecular pattern discovery using matrix factorization

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

Subsystem identification through dimensionality reduction of large-scale gene expression data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

AP-1 as a regulator of cell life and death

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

A novel type II secretion system in Pseudomonas aeruginosa

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

The potency of TCR signaling differentially regulates NFATc/p activity and early IL-4 transcription in naive CD4+ T cells

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

Sphingosine 1-phosphate-induced endothelial cell migration requires the expression of EDG-1 and EDG-3 receptors and Rho-dependent activation of alpha vbeta3- and beta1-containing integrins

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

Gene ontology: tool for the unification of biology

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

KEGG: kyoto encyclopedia of genes and genomes

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

Development of TH1 CD4+ T cells through IL-12 produced by Listeria-induced macrophages

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

Escherichia coli periplasmic protein FepB binds ferrienterobactin.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

The Pathway Coexpression Network: Revealing pathway relationships.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

Phosphatidylcholine affects the secretion of the alkaline phosphatase PhoA in Pseudomonas strains

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

Identifying epigenetically dysregulated pathways from pathway-pathway interaction networks.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

A global pathway crosstalk network

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6029133

The Ferric Uptake Regulation (Fur) Repressor Is a Zinc Metalloprotein†

12 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29988723

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Statsmodels: Econometric and Statistical Modeling with Python

1 reference

19 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/S13040-018-0175-7

Data Structures for Statistical Computing in Python

1 reference

19 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/S13040-018-0175-7

The NumPy Array: A Structure for Efficient Numerical Computation

1 reference

19 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/S13040-018-0175-7

Principal component analysis

1 reference

19 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/S13040-018-0175-7

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF

1 reference

19 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1186/S13040-018-0175-7

Identifiers

DOI

10.1186/S13040-018-0175-7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

journals/biodatamining/ChenTWDHG18

5 April 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json

5 April 2020

PubMed publication ID

29988723

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29988723%20AND%20SRC:MED&resulttype=core&format=json