Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. (Q54768088)

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English	Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots.	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

3 June 2018

http://europepmc.org/abstract/MED/12805620

Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. (English)

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Europe PubMed Central

PubMed publication ID

3 June 2018

http://europepmc.org/abstract/MED/12805620

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Shawn M. Kaeppler

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Shawn M Kaeppler

8

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Nathan M Springer

1

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3 June 2018

http://europepmc.org/abstract/MED/12805620

Carolyn A Napoli

2

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3 June 2018

http://europepmc.org/abstract/MED/12805620

David A Selinger

3

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3 June 2018

http://europepmc.org/abstract/MED/12805620

Ritu Pandey

4

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Europe PubMed Central

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3 June 2018

http://europepmc.org/abstract/MED/12805620

Karen C Cone

5

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3 June 2018

http://europepmc.org/abstract/MED/12805620

Vicki L Chandler

6

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Europe PubMed Central

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3 June 2018

http://europepmc.org/abstract/MED/12805620

Heidi F Kaeppler

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3 June 2018

http://europepmc.org/abstract/MED/12805620

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publication date

1 May 2003

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3 June 2018

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Plant Physiology

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3 June 2018

http://europepmc.org/abstract/MED/12805620

132

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PubMed publication ID

3 June 2018

http://europepmc.org/abstract/MED/12805620

2

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Europe PubMed Central

PubMed publication ID

3 June 2018

http://europepmc.org/abstract/MED/12805620

907-925

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Europe PubMed Central

PubMed publication ID

3 June 2018

http://europepmc.org/abstract/MED/12805620

ALL-1 is a histone methyltransferase that assembles a supercomplex of proteins involved in transcriptional regulation

1 reference

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25 August 2018

MLL targets SET domain methyltransferase activity to Hox gene promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Histone methyltransferase activity of a Drosophila Polycomb group repressor complex

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Histone methylation by the Drosophila epigenetic transcriptional regulator Ash1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Structure of the SET domain histone lysine methyltransferase Clr4

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Structure of the Neurospora SET domain protein DIM-5, a histone H3 lysine methyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Crystal structure and functional analysis of the histone methyltransferase SET7/9

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Structure and catalytic mechanism of a SET domain protein methyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Role of histone H3 lysine 27 methylation in Polycomb-group silencing

1 reference

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25 August 2018

G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Purification and functional characterization of SET8, a nucleosomal histone H4-lysine 20-specific methyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast

1 reference

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25 August 2018

Methylation of histone H3 by COMPASS requires ubiquitination of histone H2B by Rad6.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Methylation of histone H3 Lys 4 in coding regions of active genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

SET-domain proteins of the Su(var)3-9, E(z) and trithorax families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Sequence relationships, conserved domains, and expression patterns for maize homologs of the polycomb group genes E(z), esc, and E(Pc).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Evidence that Set1, a factor required for methylation of histone H3, regulates rDNA silencing in S. cerevisiae by a Sir2-independent mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

SPLAYED, a novel SWI/SNF ATPase homolog, controls reproductive development in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Molecular cloning of ESET, a novel histone H3-specific methyltransferase that interacts with ERG transcription factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Purification and functional characterization of a histone H3-lysine 4-specific methyltransferase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

The Saccharomyces cerevisiae Set1 complex includes an Ash2 homologue and methylates histone 3 lysine 4

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

The VERNALIZATION 2 gene mediates the epigenetic regulation of vernalization in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

A histone H3 methyltransferase controls DNA methylation in Neurospora crassa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Trithorax and dCBP acting in a complex to maintain expression of a homeotic gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

EMBRYONIC FLOWER2, a novel polycomb group protein homolog, mediates shoot development and flowering in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tails

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Translating the Histone Code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Two Arabidopsis homologs of the animal trithorax genes: a new structural domain is a signature feature of the trithorax gene family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Mechanisms of transcriptional memory

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Set domain-containing protein, G9a, is a novel lysine-preferring mammalian histone methyltransferase with hyperactivity and specific selectivity to lysines 9 and 27 of histone H3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

FASCIATA genes for chromatin assembly factor-1 in arabidopsis maintain the cellular organization of apical meristems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

The Drosophila Polycomb Group proteins ESC and E(Z) are present in a complex containing the histone-binding protein p55 and the histone deacetylase RPD3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

25 years after the nucleosome model: chromatin modifications

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Interaction of the Arabidopsis polycomb group proteins FIE and MEA mediates their common phenotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Functional interaction between the coactivator Drosophila CREB-binding protein and ASH1, a member of the trithorax group of chromatin modifiers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

The evolutionary fate and consequences of duplicate genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Expression and parent-of-origin effects for FIS2, MEA, and FIE in the endosperm and embryo of developing Arabidopsis seeds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Regulation of chromatin structure by site-specific histone H3 methyltransferases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

The PWWP domain: a potential protein-protein interaction domain in nuclear proteins influencing differentiation?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Acetylation and chromosomal functions.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Self-association of the SET domains of human ALL-1 and of Drosophila TRITHORAX and ASH1 proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

The language of covalent histone modifications

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

SMART: a web-based tool for the study of genetically mobile domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Transcriptional repression mediated by the human polycomb-group protein EED involves histone deacetylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

The GYF domain is a novel structural fold that is involved in lymphoid signaling through proline-rich sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Mutations in FIE, a WD polycomb group gene, allow endosperm development without fertilization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Genes controlling fertilization-independent seed development in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Two distinct nuclear receptor interaction domains in NSD1, a novel SET protein that exhibits characteristics of both corepressors and coactivators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

The DNA methylation locus DDM1 is required for maintenance of gene silencing in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Polycombing the genome: PcG, trxG, and chromatin silencing

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25 August 2018

Maternal control of embryogenesis by MEDEA, a polycomb group gene in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

The C-terminal SET domains of ALL-1 and TRITHORAX interact with the INI1 and SNR1 proteins, components of the SWI/SNF complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Association of SET domain and myotubularin-related proteins modulates growth control

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

A Polycomb-group gene regulates homeotic gene expression in Arabidopsis

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

The SANT domain: a putative DNA-binding domain in the SWI-SNF and ADA complexes, the transcriptional co-repressor N-CoR and TFIIIB.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

The Drosophila ash1 gene product, which is localized at specific sites on polytene chromosomes, contains a SET domain and a PHD finger

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development

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25 August 2018

Demethylation-induced developmental pleiotropy in Arabidopsis

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25 August 2018

Molecular genetic analysis of the Drosophila melanogaster gene absent, small or homeotic discs1 (ash1).

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25 August 2018

The protein encoded by the Drosophila position-effect variegation suppressor gene Su(var)3-9 combines domains of antagonistic regulators of homeotic gene complexes

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25 August 2018

Cloning and developmental expression of pea ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit N-methyltransferase

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25 August 2018

The PHD finger: implications for chromatin-mediated transcriptional regulation

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25 August 2018

Locking in stable states of gene expression: transcriptional control during Drosophila development.

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25 August 2018

Molecular analysis of the maize anthocyanin regulatory locus C1.

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25 August 2018

Genetic analysis of the enhancer of zeste locus and its role in gene regulation in Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=167030

25 August 2018

Mutations in the FIE and MEA genes that encode interacting polycomb proteins cause parent-of-origin effects on seed development by distinct mechanisms

1 reference

https://pubmed.ncbi.nlm.nih.gov/12805620

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence of domain swapping within the jumonji family of transcription factors

1 reference

https://pubmed.ncbi.nlm.nih.gov/12805620

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1104/PP.102.013722

1 reference

Europe PubMed Central

PubMed publication ID

3 June 2018

http://europepmc.org/abstract/MED/12805620

PMC publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 June 2018

http://europepmc.org/abstract/MED/12805620

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